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Protein Overview: YJL113W

General Information:
Name(s) found: YJL113W [SGD]
Description(s) found:
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  • gi|6322347|ref|NP_012421.1| Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retrov [NCBI NR]
  • gi|1078441|pir||S56894 TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4.JL [NCBI NR]
  • TY4B TY4B protein [mips]
  • - TY4B - TY4B protein [mips]
  • Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes [SGD]
  • YJL113W, Chr X from 197614-198699,198701-203026 [yeast_orfs2]
  • Chr X from 197614-198699,198701-203026 [yeastorf3.fasta]
  • YJL113W SGDID:S0003649, Chr X from 197834-198919,198921-203246, Ty ORF [yeastflysequest.fasta]
  • TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition [Saccharomyces cerevisiae]gi|1078441|pir||S56894 TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4.JL [nrdb_11152004_Chlamydomonas]
  • YJL113W SGDID:S000003649, Chr X from 197834-198919,198921-203246, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YJL113W SGDID:S000003649, Chr X from 197913-198998,199000-203325, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transc [yeast-contam.fasta]
  • YJL113W SGDID:S000003649, Chr X from 197912-198997,198999-203324, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transc [yeast-200209-contam.fasta]
  • TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4.JL [nr-271106-contam.fasta]
  • Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; Yjl113wp [Saccha [nr-271106-contam.fasta]
  • YJL113W SGDID:S000003649, Chr X from 197912-198997,198999-203324, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes" [yeast-bovrabprots.fasta]
  • YJL113W SGDID:S000003649, Chr X from 197913-198998,199000-203325, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=2 SV=3 [YEAST.fasta.20131015]
    • Organism: Saccharomyces cerevisiae
    Length: 1803 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article]
    retrotransposon nucleocapsid [ISSLink to PubMed article]
    Biological Process: transposition, RNA-mediated [ISSLink to PubMed article]
    Molecular Function: DNA-directed DNA polymerase activity [ISSLink to PubMed article]
    RNA-directed DNA polymerase activity [ISSLink to PubMed article]
    RNA binding [ISSLink to PubMed article]
    protein binding [ISSLink to PubMed article]
    ribonuclease activity [ISSLink to PubMed article]
    peptidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVRGETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVRQ YQRNLNRFKT  60
   61 ILNGLKAEEE KLSEADDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
  121 HIDATGTYYL FDTLTSTNKR FYPKDCVFDY RTNNVENIPI LLNNFKKFIK KYQFDDVFEN 180
  181 DIIEIDPREN EILCKIIKEG LGESLDIMNT NTTDIFRIID GLKKQNIEVC MVEMSELEPG 240
  241 EKVLVDTTCR NSALLMNKLQ KLVLMEKWIF SKCCQDCPNL KDYLQEAIMG TLHESLRNSV 300
  301 KQRLYNIPHD VGIDHEEFLI NTVIETVIDL SPIADDQIEN SCMYCKSVFH CSINCKKKPN 360
  361 RELGLTRPIS QKPIIYKVHR DNNHLSPVQN EQKSWNKTQK RSNKVYNSKK LVIIDTGSGV 420
  421 NITNDKTLLH NYEDSNRSTR FFGIGKNSSV SVKGYGYIKI KNGHNNTDNK CLLTYYVPEE 480
  481 ESTIISCYDL AKKTKMVLSR KYTRLGNKII KIKTKIVNGV IHVKMNELIE RPSDDSKINA 540
  541 IKPTSSPGFK LNKRSITLED AHKRMGHTGI QQIENSIKHN HYEESLDLIK EPNEFWCQTC 600
  601 KISKATKRNH YTGSMNNHST DHEPGSSWCM DIFGPVSSSN ADTKRYMLIM VDNNTRYCMT 660
  661 STHFNKNAET ILAQVRKNIQ YVETQFDRKV REINSDRGTE FTNDQIEEYF ISKGIHHILT 720
  721 STQDHAANGR AERYIRTIIT DATTLLRQSN LRVKFWEYAV TSATNIRNYL EHKSTGKLPL 780
  781 KAISRQPVTV RLMSFLPFGE KGIIWNHNHK KLKPSGLPSI ILCKDPNSYG YKFFIPSKNK 840
  841 IVTSDNYTIP NYTMDGRVRN TQNINKSHQF SSDNDDEEDQ IETVTNLCEA LENYEDDNKP 900
  901 ITRLEDLFTE EELSQIDSNA KYPSPSNNLE GDLDYVFSDV EESGDYDVES ELSTTNNSIS 960
  961 TDKNKILSNK DFNSELASTE ISISGIDKKG LINTSHIDED KYDEKVHRIP SIIQEKLVGS1020
 1021 KNTIKINDEN KISDRIRSKN IGSILNTGLS RCVDITDESI TNKDESMHNA KPELIQEQLK1080
 1081 KTNHETSFPK EGSIGTNVKF RNTNNEISLK TGDTSLPIKT LESINNHHSN DYSTNKVEKF1140
 1141 EKENHHPPPI EDIVDMSDQT DMESNCQDGN NLKELKVTDK NVPTDNGTNV SPRLEQNIEA1200
 1201 SGSPVQTVNK SAFLNKEFSS LNMKRKRKRH DKNNSLTSYE LERDKKRSKK NRVKLIPDNM1260
 1261 ETVSAPKIRA IYYNEAISKN PDLKEKHEYK QAYHKELQNL KDMKVFDVDV KYSRSEIPDN1320
 1321 LIVPTNTIFT KKRNGIYKAR IVCRGDTQSP DTYSVITTES LNHNHIKIFL MIANNRNMFM1380
 1381 KTLDINHAFL YAKLEEEIYI PHPHDRRCVV KLNKALYGLK QSPKEWNDHL RQYLNGIGLK1440
 1441 DNSYTPGLYQ TEDKNLMIAV YVDDCVIAAS NEQRLDEFIN KLKSNFELKI TGTLIDDVLD1500
 1501 TDILGMDLVY NKRLGTIDLT LKSFINRMDK KYNEELKKIR KSSIPHMSTY KIDPKKDVLQ1560
 1561 MSEEEFRQGV LKLQQLLGEL NYVRHKCRYD IEFAVKKVAR LVNYPHERVF YMIYKIIQYL1620
 1621 VRYKDIGIHY DRDCNKDKKV IAITDASVGS EYDAQSRIGV ILWYGMNIFN VYSNKSTNRC1680
 1681 VSSTEAELHA IYEGYADSET LKVTLKELGE GDNNDIVMIT DSKPAIQGLN RSYQQPKEKF1740
 1741 TWIKTEIIKE KIKEKSIKLL KITGKGNIAD LLTKPVSASD FKRFIQVLKN KITSQDILAS1800
 1801 TDY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) YAR009C YCL019W YDR210C-C YDR210C-D YDR210W-B YDR316W-B YER138C YER160C YGR027W-B YGR038C-B YGR161C-D YJL113W YLR227W-B YML039W YMR050C YNL054W-B YNL284C-B YOL103W-B YOR192C-B YOR343W-A YOR343W-B

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ASF1 3829 - low filter Green EM, et al (2005)
    View Run RLF2 identification data - first search in cascade Green EM, et al (2005)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #02 Alpha Factor Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)
    View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle