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Protein Overview: SET4

General Information:
Name(s) found: SET4 / YJL105W [SGD]
Description(s) found:
Found 26 descriptions.
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  • Protein of unknown function, contains a SET domain [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 560 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPESLSSR HIRQGRTYTT TDKVISRSSS YSSNSSMSKD YGDHTPLSVS SAASETLPSP  60
   61 QYMPIRTFNT MPTAGPTPLH LFQNDRGIFN HHSSSGSSKT ASTNKRGIAA AVALATAATI 120
  121 PFPLKKQNQD DNSKVSVTHN ESSKENKITP SMRAEDNKPK NGCICGSSDS KDELFIQCNK 180
  181 CKTWQHKLCY AFKKSDPIKR DFVCKRCDSD TKVQVNQVKP MIFPRKMGDE RLFQFSSIVT 240
  241 TSASNTNQHQ QSVNNIEEQP KKRQLHYTAP TTENSNSIRK KLRQEKLVVS SHFLKPLLNE 300
  301 VSSSNDTEFK AITISEYKDK YVKMFIDNHY DDDWVVCSNW ESSRSADIEV RKSSNERDFG 360
  361 VFAADSCVKG ELIQEYLGKI DFQKNYQTDP NNDYRLMGTT KPKVLFHPHW PLYIDSRETG 420
  421 GLTRYIRRSC EPNVELVTVR PLDEKPRGDN DCRVKFVLRA IRDIRKGEEI SVEWQWDLRN 480
  481 PIWEIINASK DLDSLPDPDK FWLMGSIKTI LTNCDCACGY LGHNCPITKI KNFSEEFMRN 540
  541 TKESLSNKSY FNTIMHNCKP

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) AME1 ARG5,6 CHL4 CTF19 CTF3 IML3 MCM16 MCM21 MCM22 NKP1 NKP2 OKP1 PRP18 SET4 YNR062C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] MSA 1.121989 View MSA. No confident structure predictions are available.
    2 View Details [96..245] PSI-BLAST 4.045757 Nuclear corepressor KAP-1 (TIF-1beta)
    3 View Details [246..560] MSA 30.180995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.654291041691191 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle