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Protein Overview: YIR007W

General Information:
Name(s) found: YIR007W [SGD]
Description(s) found:
Found 19 descriptions.
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  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR007W is a non-essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 764 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAKIHISAD GQFCDKDGNE IQLRGVNLDP SVKIPAKPFL STHAPIENDT FFEDADKVSF  60
   61 INHPLVLDDI EQHIIRLKSL GYNTIRLPFT WESLEHAGPG QYDFDYMDYI VEVLTRINSV 120
  121 QQGMYIYLDP HQDVWSRFSG GSGAPLWTLY CAGFQPANFL ATDAAILHNY YIDPKTGREV 180
  181 GKDEESYPKM VWPTNYFKLA CQTMFTLFFG GKQYAPKCTI NGENIQDYLQ GRFNDAIMTL 240
  241 CARIKEKAPE LFESNCIIGL ESMNEPNCGY IGETNLDVIP KERNLKLGKT PTAFQSFMLG 300
  301 EGIECTIDQY KRTFFGFSKG KPCTINPKGK KAWLSAEERD AIDAKYNWER NPEWKPDTCI 360
  361 WKLHGVWEIQ NGKRPVLLKP NYFSQPDATV FINNHFVDYY TGIYNKFREF DQELFIIIQP 420
  421 PVMKPPPNLQ NSKILDNRTI CACHFYDGMT LMYKTWNKRI GIDTYGLVNK KYSNPAFAVV 480
  481 LGENNIRKCI RKQLSEMQKD AKSMLGKKVP VFFTEIGIPF DMDDKKAYIT NDYSSQTAAL 540
  541 DALGFALEGS NLSYTLWCYC SINSHIWGDN WNNEDFSIWS PDDKPLYHDT RAKTPTPEPS 600
  601 PASTVASVST STSKSGSSQP PSFIKPDNHL DLDSPSCTLK SDLSGFRALD AIMRPFPIQI 660
  661 HGRFEFAEFN LCNKSYLLKL VGKTTPEQIT VPTYIFIPRH HFTPSRLSIR SSSGHYTYNT 720
  721 DYQVLEWFHE PGHQFIEICA KSKSRPNTPG SDTSNDLPAE CVIS

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) SAH1 YIR007W

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YIR007W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] deduced N/A No confident structure predictions are available.
    2 View Details [70..167] PSI-BLAST 2.30103 Endoglucanase CelA
    3 View Details [168..764] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle