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Protein Overview: RRT5

General Information:
Name(s) found: RRT5 / YFR032C [SGD]
Description(s) found:
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  • gi|836787|dbj|BAA09271.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|14318556|ref|NP_116689.1| Putative protein of unknown function; transcribed during sporulation; YFR032C is not an essential gene; Yfr032cp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1176012|sp|P43607.1|YFK2_YEAST RecName: Full=Uncharacterized RNA-binding protein YFR032C [NCBI NR]
  • pir||S56287 hypothetical protein YFR032c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Uncharacterized RNA-binding protein YFR032C OS=Saccharomyces cerevisiae GN=YFR032C PE=1 SV=1 [Swiss-Prot]
  • Weak similarity to S.pombe polyadenylate-binding protein, YPR112c and Sbp1p [mips]
  • Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation [SGD]
  • YFR032C, Chr VI from 222077-222946, reverse complement [yeast_orfs2]
  • Chr VI from 222077-222946, reverse complement [yeastorf3.fasta]
  • Chr VI from 222947-222078, reverse complement [yeastorf5.fasta]
  • (P43607) Hypothetical 31.9 kDa protein in RPL2A-RPL29 intergenic region [4932.FASTACCERV.txt]
  • YFR032C SGDID:S0001928, Chr VI from 222947-222078, reverse complement, Uncharacterized ORF [yeastflysequest.fasta]
  • Yfr032cp [Saccharomyces cerevisiae]gi|1176012|sp|P43607|YFK2_YEAST Hypothetical 31.9 kDa protein in RPL2A-RPL29 intergenic regiongi|1084749|pir||S56287 hypothetical protein YFR032c - yeast (Saccharomyces cerevisiae)gi|836787|dbj|BAA09271.1| YFR032C [Sa [nrdb_11152004_Chlamydomonas]
  • YFR032C SGDID:S000001928, Chr VI from 222947-222078, reverse complement, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YFR032C SGDID:S000001928, Chr VI from 222947-222078, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; transcribed during sporulation; YFR032C is not an essential gene" [yeast-contam.fasta]
  • RRT5 SGDID:S000001928, Chr VI from 222947-222078, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels d [SGD_S-cerevisiae_na_05-08-2009_con_reversed.fasta]
  • Putative protein of unknown function; transcribed during sporulation; YFR032C is not an essential gene; Yfr032cp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Probable RNA-binding protein YFR032C [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • RRT5 SGDID:S000001928, Chr VI from 222947-222078, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation" [scerevisihumanrev.fasta]
  • [chemostatdb.fasta]
  • RRT5 SGDID:S000001928, Chr VI from 222959-222090, Genome Release 64-1-1, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation" [yeast-030211-contam.fasta]
  • RRT5 SGDID:S000001928, Chr VI from 222959-222090, Genome Release 64-2-1, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation" [20141208_orf_trans.fasta]
  • YFR032C SGDID:S000001928, Chr VI from 222959-222090, Genome Release 64-1-1, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT QTVRRFSKRH  60
   61 NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL KLHVPYEADS TPDTDVKKPK 120
  121 EKNKVKKTPE TAADTVYCHD LPDDITDSEI RELFQLYSPQ EIWIYRSKVY RRKCIPFAPH 180
  181 QITAALVTLQ SETPIGDICD SVAKTATLRG KSIIVKPAYV SKIQEIKQLV KDNLTNARDP 240
  241 PPAALAEPAP APAPVEPAEQ VQEGQDNAET NDVPPPPASS SDRPTVAAT

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) RRT5 TOA1 TOA2

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen NOP6 RRT5 2 Uetz P, et al. (2000)
    View Screen RRB1 RRT5 1 Unpublished Fields Lab Data
    View Screen YIF1 RRT5 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] PSI-BLAST 59.221849 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [107..289] PSI-BLAST 59.221849 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.3641419747005 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.652211965253825 bayes_pls_golite062009
  • RNA binding
    		•  0.498012521772139 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle