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Protein Overview: RRT5

General Information:
Name(s) found: RRT5 / YFR032C [SGD]
Description(s) found:
Found 24 descriptions.
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  • Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT QTVRRFSKRH  60
   61 NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL KLHVPYEADS TPDTDVKKPK 120
  121 EKNKVKKTPE TAADTVYCHD LPDDITDSEI RELFQLYSPQ EIWIYRSKVY RRKCIPFAPH 180
  181 QITAALVTLQ SETPIGDICD SVAKTATLRG KSIIVKPAYV SKIQEIKQLV KDNLTNARDP 240
  241 PPAALAEPAP APAPVEPAEQ VQEGQDNAET NDVPPPPASS SDRPTVAAT

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) RRT5 TOA1 TOA2

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen NOP6 RRT5 2 Uetz P, et al. (2000)

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] PSI-BLAST 59.221849 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
    2 View Details [107..289] PSI-BLAST 59.221849 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.3641419747005 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.652211965253825 bayes_pls_golite062009
  • RNA binding
    		•  0.498012521772139 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle