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View Structure Prediction Details

Protein: RRT5
Organism: Saccharomyces cerevisiae
Length: 289 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT5.

Description E-value Query
Range		 Subject
Range
gi|13560783 - gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
 1.0E-65 [5..283] [206..462]
PABP8_ARATH - Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1
 3.0E-65 [7..283] [213..466]
gi|7673355 - gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
 1.0E-62 [7..283] [195..449]
gi|7528270 - gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
 2.0E-62 [5..286] [195..455]
PABPC4 - poly(A) binding protein, cytoplasmic 4 (inducible form)
 4.0E-62 [2..288] [175..447]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-61 [5..288] [198..456]

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Predicted Domain #1
Region A:
Residues: [1-106] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQVNNDTT SDTTTTITTV YISNLPFTAS ERDLHAFLNN YGASSVLIPT QTVRRFSKRH  60
   61 NSNPRKPLGI AFAQFANNTL ALKAIQDLNG TVFQNQKLFL KLHVPY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.221849
Match: 1ha1__
Description: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.3641419747005 bayes_pls_golite062009
nucleic acid binding 0.652211965253825 bayes_pls_golite062009
RNA binding 0.498012521772139 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [107-289] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EADSTPDTDV KKPKEKNKVK KTPETAADTV YCHDLPDDIT DSEIRELFQL YSPQEIWIYR  60
   61 SKVYRRKCIP FAPHQITAAL VTLQSETPIG DICDSVAKTA TLRGKSIIVK PAYVSKIQEI 120
  121 KQLVKDNLTN ARDPPPAALA EPAPAPAPVE PAEQVQEGQD NAETNDVPPP PASSSDRPTV 180
  181 AAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.221849
Match: 1ha1__
Description: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle