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Protein Overview: YBR238C

General Information:
Name(s) found: YBR238C [SGD]
Description(s) found:
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  • gi|6319715|ref|NP_009797.1| Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increase [NCBI NR]
  • pir||S46115 hypothetical protein YBR238c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|586353|sp|P38330.1|RMD9L_YEAST RecName: Full=Protein RMD9-like, mitochondrial; Flags: Precursor [NCBI NR]
  • gi|536643|emb|CAA85201.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • Uncharacterized protein YBR238C - Saccharomyces cerevisiae (Baker's yeast) [Swiss-Prot]
  • Protein RMD9-like, mitochondrial OS=Saccharomyces cerevisiae GN=YBR238C PE=1 SV=1 [Swiss-Prot]
  • Protein of unknown function localised to cytoplasm and mitochondria [mips]
  • Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span [SGD]
  • YBR238C, Chr II from 695065-697260, reverse complement [yeast_orfs2]
  • Chr II from 695065-697260, reverse complement [yeastorf3.fasta]
  • Chr II from 695064-697259, reverse complement [yeastorf4.fasta]
  • Chr II from 697257-695062, reverse complement [yeastorf5.fasta]
  • (P38330) Hypothetical 83.7 kDa protein in PRP5-THI2 intergenic region [4932.FASTACCERV.txt]
  • YBR238C SGDID:S0000442, Chr II from 697259-695064, reverse complement, Uncharacterized ORF [yeastflysequest.fasta]
  • YBR238C SGDID:S0000442, Chr II from 697297-695102, reverse complement, Uncharacterized ORF [10112005cervSGD.fasta]
  • Ybr238cp [Saccharomyces cerevisiae]gi|536643|emb|CAA85201.1| unnamed protein product [Saccharomyces cerevisiae]gi|626551|pir||S46115 hypothetical protein YBR238c - yeast (Saccharomyces cerevisiae)gi|586353|sp|P38330|YB88_YEAST Hypothetical 83.7 kDa pro [nrdb_11152004_Chlamydomonas]
  • YBR238C SGDID:S000000442, Chr II from 697297-695102, reverse complement, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YBR238C SGDID:S000000442, Chr II from 697297-695102, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and mitochondrion; YBR238C is not an essential g [yeast-contam.fasta]
  • YBR238C SGDID:S000000442, Chr II from 697297-695102, reverse complement, Verified ORF, "Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutatio [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and mitochondrion; YBR238C is not an essential gene; transcriptionally up-regulated by TOR and deletion increases life span; Ybr238cp [Saccharo [nr-271106-contam.fasta]
  • Uncharacterized protein YBR238C [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YBR238C SGDID:S000000442, Chr II from 697297-695102, reverse complement, Verified ORF, "Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span" [yeast-bovrabprots.fasta]
  • YBR238C SGDID:S000000442, Chr II from 697297-695102, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and mitochondrion; YBR238C is not an essential gene; transcriptionally up-regulated by TOR and deletion increases life span" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • Protein RMD9-like, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR238C PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YBR238C SGDID:S000000442, Chr II from 697302-695107, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span" [yeast-030211-contam.fasta]
  • YBR238C SGDID:S000000442, Chr II from 697302-695107, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial membrane protein; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span; YBR238C has a paralog, RMD9, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 731 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLAQQTQV LKGKPPNQFV PHPTKNSLTH PMKFNGTIAM EHHEHNYAIP YTPATFNNPA  60
   61 LATYQVSPAN HFVPHFGGNI GANNNNHLAQ NNSNNSNNHH NNNRNHHHNN NRNHHQNNHN 120
  121 HSKYNNSNQG NSISPDSPWF HKVCAFEDCV SQTLYMSQTP RRQNMKHHSE HPNSNANPLF 180
  181 WDSIGRAMGL YHDLLTTPEL NSDRVSKLVH LLHNGLRANR NQLTRMNKKP DYDSQSFHKE 240
  241 MTNYLCKSLR EISEDVLNGK VELNEYGAMH LITAFKELLL FEEAVDIWKA AINGQNTYTS 300
  301 NIFLNPRVVG VILPILYDNG VSYPEIQALY EKSSSMINYF HPNLSVGMIR ASLSASENDM 360
  361 ALKLFQKLCQ ESTEMKYGYL IETHLSFIGE CKDLNVAQTF FDKALNDEMP YKIDLQVSYV 420
  421 KSFLRNIWSQ TRDFNHIYQI WYKSSLHYGR NVNHGISSSL NDTFFDIFFE NYAVDKMQGF 480
  481 QTLQNIIQTY NNIKHIDEPF FNIILAKCTV WHDRSILEYI DKSYEAYHIP KTIVAYRILL 540
  541 KSMGSVDDAS NAEILQRWMD LIRKSDEIGQ RFIANADWAA LRDATVTWTQ NDRDSKKSNM 600
  601 NSTQISRTAT PSPSLTPMDT PAPEHLFNNP QNPMDFYSHP ALQAATASGA FDEFAAEAAS 660
  661 SSIPVDGRMV LYLKIVKRYS PYCRDSRQLA RLTTGTAVKY SVLQEVLNQF QTLIVNDIPI 720
  721 PELHNLKPTC V

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Gavin AC, et al. (2002) BOI1 GFA1 YBR238C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YBR238C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] ORFEUS 8.36 No description for 1l8mA was found.
    2 View Details [98..167] ORFEUS 8.36 No description for 1l8mA was found.
    3 View Details [168..293] ORFEUS 8.36 No description for 1l8mA was found.
    4 View Details [294..731] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle