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Protein Overview: YBR238C

General Information:
Name(s) found: YBR238C [SGD]
Description(s) found:
Found 28 descriptions.
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  • Mitochondrial membrane protein with similarity to Rmd9p; not required for respiratory growth but causes a synthetic respiratory defect in combination with rmd9 mutations; transcriptionally up-regulated by TOR; deletion increases life span [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 731 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLAQQTQV LKGKPPNQFV PHPTKNSLTH PMKFNGTIAM EHHEHNYAIP YTPATFNNPA  60
   61 LATYQVSPAN HFVPHFGGNI GANNNNHLAQ NNSNNSNNHH NNNRNHHHNN NRNHHQNNHN 120
  121 HSKYNNSNQG NSISPDSPWF HKVCAFEDCV SQTLYMSQTP RRQNMKHHSE HPNSNANPLF 180
  181 WDSIGRAMGL YHDLLTTPEL NSDRVSKLVH LLHNGLRANR NQLTRMNKKP DYDSQSFHKE 240
  241 MTNYLCKSLR EISEDVLNGK VELNEYGAMH LITAFKELLL FEEAVDIWKA AINGQNTYTS 300
  301 NIFLNPRVVG VILPILYDNG VSYPEIQALY EKSSSMINYF HPNLSVGMIR ASLSASENDM 360
  361 ALKLFQKLCQ ESTEMKYGYL IETHLSFIGE CKDLNVAQTF FDKALNDEMP YKIDLQVSYV 420
  421 KSFLRNIWSQ TRDFNHIYQI WYKSSLHYGR NVNHGISSSL NDTFFDIFFE NYAVDKMQGF 480
  481 QTLQNIIQTY NNIKHIDEPF FNIILAKCTV WHDRSILEYI DKSYEAYHIP KTIVAYRILL 540
  541 KSMGSVDDAS NAEILQRWMD LIRKSDEIGQ RFIANADWAA LRDATVTWTQ NDRDSKKSNM 600
  601 NSTQISRTAT PSPSLTPMDT PAPEHLFNNP QNPMDFYSHP ALQAATASGA FDEFAAEAAS 660
  661 SSIPVDGRMV LYLKIVKRYS PYCRDSRQLA RLTTGTAVKY SVLQEVLNQF QTLIVNDIPI 720
  721 PELHNLKPTC V

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Gavin AC, et al. (2002) BOI1 GFA1 YBR238C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YBR238C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] ORFEUS 8.36 No description for 1l8mA was found.
    2 View Details [98..167] ORFEUS 8.36 No description for 1l8mA was found.
    3 View Details [168..293] ORFEUS 8.36 No description for 1l8mA was found.
    4 View Details [294..731] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle