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Protein Overview: SUMO1_RAT

General Information:
Name(s) found: SUMO1_RAT [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 101 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IDA]
    dendrite [IDA]
    PML body [UNKNOWN]
    cytoplasm [IEA]
    synapse [IDA]
    Biological Process: negative regulation of DNA binding [UNKNOWN]
    protein sumoylation [UNKNOWN]
    negative regulation of transcription [UNKNOWN]
    negative regulation of transcription factor activity [UNKNOWN]
    regulation of transcription [UNKNOWN][IEA]
    positive regulation of protein complex assembly [UNKNOWN]
    Molecular Function: protein binding [UNKNOWN]
    transcription factor binding [UNKNOWN][IEA]
    SUMO ligase activity [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQEAKPST EDLGDKKEGE YIKLKVIGQD SSEIHFKVKM TTHLKKLKES YCQRQGVPMN  60
   61 SLRFLFEGQR IADNHTPKEL GMEEEDVIEV YQEQTGGHST V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] PSI-BLAST 25.69897 STRUCTURE DETERMINATION OF THE SMALL UBIQUITIN-RELATED MODIFIER SUMO-1, NMR, 10 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SUMO ligase activity
    		•  3.84399877513864 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  3.71144418714309 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  2.89535476350045 bayes_pls_golite062009
  • binding
    		•  2.786655943372 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.72499875710239 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.21955949922709 bayes_pls_golite062009
  • protein tag
    		•  2.15059229834935 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.9984951714209 bayes_pls_golite062009
  • protein binding
    		•  1.86841453215444 bayes_pls_golite062009
  • DNA binding
    		•  1.86539227646379 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.73491621577173 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.34783881509181 bayes_pls_golite062009
  • tubulin binding
    		•  0.984710328639471 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.753885975469065 bayes_pls_golite062009
  • microtubule binding
    		•  0.721760846967789 bayes_pls_golite062009
  • signal transducer activity
    		•  0.65988002090613 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.65988002090613 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.62324312069889 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.599634454232833 bayes_pls_golite062009
  • structural molecule activity
    		•  0.576819726104993 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.570143717979967 bayes_pls_golite062009
  • protein kinase activity
    		•  0.325253662829604 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.249928925871521 bayes_pls_golite062009
  • enzyme binding
    		•  0.240262781026149 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0871262449740772 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0816453389356582 bayes_pls_golite062009
  • kinase activity
    		•  0.0363894273406812 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle