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Protein Overview: gi|56966015, gi|...

General Information:
Name(s) found: gi|56966015 [NCBI NR]
gi|56966014 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|56966015|pdb|1T0F|B Chain B, Crystal Structure Of The TnsaTNSC(504-555) Complex [NCBI NR]
  • gi|56966014|pdb|1T0F|A Chain A, Crystal Structure Of The TnsaTNSC(504-555) Complex [NCBI NR]
    • Organism: Escherichia coli
    Length: 276 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSAMAKANSS FSEVQIARRI KEGRGQGHGK DYIPWLTVQE VPSSGRSHRI YSHKTGRVHH  60
   61 LLSDLELAVF LSLEWESSVL DIREQFPLLP SDTRQIAIDS GIKHPVIRGV DQVMSTDFLV 120
  121 DCKDGPFEQF AIQVKPAAAL QDERTLEKLE LERRYWQQKQ IPWFIFTDKE INPVVKENIE 180
  181 WLYSVKTEEV SAELLAQLSP LAHILQEKGD ENIINVCKQV DIAYDLELGK TLSEIRALTA 240
  241 NGFIKFNIYK SFRANKCADL CISQVVNMEE LRYVAN

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. LGUL_ECOLI NFSA_ECOLI PDXK_ECOLI YRAO_ECOLI, DIAA... gi|134105085, gi... gi|189095939, gi... gi|56966015, gi|... gi|60594470, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..276] PSI-BLAST 89.154902 Crystal Structure of the TnsA/TnsC(504-555) complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transposase activity
    		•  5.85386541527308 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  3.52550844883954 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  3.46092137748785 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  3.0991947840905 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.01009518141427 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.87729080403218 bayes_pls_golite062009
  • single-stranded DNA specific endodeoxyribonuclease activity
    		•  2.31907631615518 bayes_pls_golite062009
  • transcription factor activity
    		•  2.19132959032624 bayes_pls_golite062009
  • nuclease activity
    		•  1.25814640084356 bayes_pls_golite062009
  • endonuclease activity
    		•  1.24642331865775 bayes_pls_golite062009
  • binding
    		•  1.15106991667759 bayes_pls_golite062009
  • damaged DNA binding
    		•  1.13029144747469 bayes_pls_golite062009
  • DNA binding
    		•  1.05025565428795 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.00486797573596 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.93961699880918 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.878597940882332 bayes_pls_golite062009
  • catalytic activity
    		•  0.816447099398022 bayes_pls_golite062009
  • hydrolase activity
    		•  0.813010242398432 bayes_pls_golite062009
  • transcription activator activity
    		•  0.73287613732806 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.697234220778482 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  0.66439287326234 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.613365549270509 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.120530519654142 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.0793740780332699 bayes_pls_golite062009
  • protein binding
    		•  0.014476536759339 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle