Protein Overview: CH60B_ARATH

General Information:
Name(s) found:	CH60B_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|75301136\|sp\|Q8L7B5.1\|CH60B_ARATH RecName: Full=Chaperonin CPN60-like 1, mitochondrial; AltName: Full=HSP60-like 1; Flags: Precursor [NCBI NR] gi\|51968972\|dbj\|BAD43178.1\| mitochondrial chaperonin (HSP60) [Arabidopsis thaliana] [NCBI NR] gi\|30685604\|ref\|NP_850203.1\| HSP60-2 (HEAT SHOCK PROTEIN 60-2); ATP binding [Arabidopsis thaliana] [NCBI NR] gi\|23197790\|gb\|AAN15422.1\| mitochondrial chaperonin HSP60 [Arabidopsis thaliana] [NCBI NR] gi\|22531044\|gb\|AAM97026.1\| mitochondrial chaperonin HSP60 [Arabidopsis thaliana] [NCBI NR] Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=2 SV=1 [Swiss-Prot] mitochondrial chaperonin HSP60 [Arabidopsis thaliana]gi\|22531044\|gb\|AAM97026.1\| mitochondrial chaperonin HSP60 [Arabidopsis thaliana]gi\|51968972\|dbj\|BAD43178.1\| mitochondrial chaperonin (HSP60) [Arabidopsis thaliana]gi\|30685604\|ref\|NP_850203.1\| chapero [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Chaperonin [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: \| chaperonin, putative \| chr2:14082170-14085645 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] mitochondrial chaperonin (HSP60) [Arabidopsis thaliana] [nr-271106-contam.fasta] mitochondrial chaperonin HSP60 [Arabidopsis thaliana] [nr-271106-contam.fasta] ATP binding / protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta] Chaperonin CPN60-like 1, mitochondrial precursor (HSP60-like 1) [nr-271106-contam.fasta] \| Symbols: HSP60-2 \| heat shock protein 60-2 \| chr2:14075093-14078568 REVERSE LENGTH=585 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta] Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 [ARATH-contam.fasta]
Organism:	Arabidopsis thaliana
Length:	585 amino acids
Gene Ontology:
Cellular Component:	chloroplast [IDA] mitochondrion [IDA][ISS] plasma membrane [IDA]
Biological Process:	inflammatory response [ISS]
Molecular Function:	ATP binding [IDA] copper ion binding [IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV  60
   61 TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV GASLVKQVAN ATNDVAGDGT 120
  121 TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT 180
  181 ISANGDREIG ELIAKAMETV GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK 240
  241 TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA 300
  301 NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD 360
  361 TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL AKLSGGVAVL KIGGASETEV 420
  421 SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT 480
  481 PVYTIASNAG VEGAVVVGKL LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA 540
  541 SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
unfolded protein binding	7.60116801069598	bayes_pls_golite062009
misfolded protein binding	2.60932901317399	bayes_pls_golite062009
lipopolysaccharide binding	2.08823822762317	bayes_pls_golite062009
binding	2.07154556649829	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	1.90846357786961	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	1.85422470116133	bayes_pls_golite062009
protein binding	1.68543685258552	bayes_pls_golite062009
nucleic acid binding	1.67284737458957	bayes_pls_golite062009
DNA binding	1.53776996197958	bayes_pls_golite062009
transporter activity	1.27879339110564	bayes_pls_golite062009
transmembrane transporter activity	1.08697283907212	bayes_pls_golite062009
chaperone binding	0.91200031047441	bayes_pls_golite062009
substrate-specific transporter activity	0.828920415160435	bayes_pls_golite062009
ATPase activity, coupled	0.787685249362834	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.75018875403424	bayes_pls_golite062009
pyrophosphatase activity	0.69634667457441	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.682843768728088	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.680378643689288	bayes_pls_golite062009
structure-specific DNA binding	0.650832159017275	bayes_pls_golite062009
ATPase activity	0.584574936611857	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.573106450426516	bayes_pls_golite062009
insulin binding	0.54263404774246	bayes_pls_golite062009
single-stranded DNA binding	0.44104272460881	bayes_pls_golite062009
catalytic activity	0.424959044318554	bayes_pls_golite062009
cell surface binding	0.326492680678891	bayes_pls_golite062009
peptide hormone binding	0.280457039468896	bayes_pls_golite062009
ion transmembrane transporter activity	0.280310103153739	bayes_pls_golite062009
active transmembrane transporter activity	0.275534581026027	bayes_pls_golite062009
primary active transmembrane transporter activity	0.252704226951294	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.243984617084631	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.205808843369749	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.202279803135899	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.20198255686005	bayes_pls_golite062009
cation transmembrane transporter activity	0.0778814959589007	bayes_pls_golite062009
hydrolase activity	0.0491351110520448	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.70

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..585]	PSI-BLAST	174.0	GroEL, E domain; GroEL, A domain; GroEL, I domain

Protein Overview: CH60B_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: