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Protein Overview: CH60B_ARATH

General Information:
Name(s) found: CH60B_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 585 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA][ISS]
    plasma membrane [IDA]
    Biological Process: inflammatory response [ISS]
    Molecular Function: ATP binding [IDA]
    copper ion binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV  60
   61 TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV GASLVKQVAN ATNDVAGDGT 120
  121 TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT 180
  181 ISANGDREIG ELIAKAMETV GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK 240
  241 TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA 300
  301 NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD 360
  361 TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL AKLSGGVAVL KIGGASETEV 420
  421 SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT 480
  481 PVYTIASNAG VEGAVVVGKL LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA 540
  541 SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..585] PSI-BLAST 174.0 GroEL, E domain; GroEL, A domain; GroEL, I domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  7.60116801069598 bayes_pls_golite062009
  • misfolded protein binding
    		•  2.60932901317399 bayes_pls_golite062009
  • lipopolysaccharide binding
    		•  2.08823822762317 bayes_pls_golite062009
  • binding
    		•  2.07154556649829 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  1.90846357786961 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  1.85422470116133 bayes_pls_golite062009
  • protein binding
    		•  1.68543685258552 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67284737458957 bayes_pls_golite062009
  • DNA binding
    		•  1.53776996197958 bayes_pls_golite062009
  • transporter activity
    		•  1.27879339110564 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.08697283907212 bayes_pls_golite062009
  • chaperone binding
    		•  0.91200031047441 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.828920415160435 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  0.787685249362834 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.75018875403424 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.69634667457441 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.682843768728088 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.680378643689288 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.650832159017275 bayes_pls_golite062009
  • ATPase activity
    		•  0.584574936611857 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.573106450426516 bayes_pls_golite062009
  • insulin binding
    		•  0.54263404774246 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.44104272460881 bayes_pls_golite062009
  • catalytic activity
    		•  0.424959044318554 bayes_pls_golite062009
  • cell surface binding
    		•  0.326492680678891 bayes_pls_golite062009
  • peptide hormone binding
    		•  0.280457039468896 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.280310103153739 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.275534581026027 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.252704226951294 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.243984617084631 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.205808843369749 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.202279803135899 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.20198255686005 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0778814959589007 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0491351110520448 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.70

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle