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Protein Overview: ATG4B_ORYSJ

General Information:
Name(s) found: ATG4B_ORYSJ [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 478 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLPDRGVS SSSSDPLCEG NIAPCSSSSE QKEDCSLKQS KTSILSCVFN SPFNIFEAHQ  60
   61 DSSANKSPKS SSGSYDWSRV LRRIVCSGSM WRFLGTSKVL TSSDVWFLGK CYKLSSEESS 120
  121 SDSDSESGHA TFLEDFSSRI WITYRRGFDA ISDSKYTSDV NWGCMVRSSQ MLVAQALIFH 180
  181 HLGRSWRRPL EKPYNPEYIG ILHMFGDSEA CAFSIHNLLQ AGNSYGLAAG SWVGPYAMCR 240
  241 AWQTLVRTNR EQHEVVDGNE SFPMALYVVS GDEDGERGGA PVVCIDVAAQ LCCDFNKGQS 300
  301 TWSPILLLVP LVLGLDKINP RYIPLLKETF TFPQSLGILG GKPGTSTYIA GVQDDRALYL 360
  361 DPHEVQMAVD IAADNIEADT SSYHCSTVRD LALDLIDPSL AIGFYCRDKD DFDDFCSRAT 420
  421 ELVDKANGAP LFTVVQSVQP SKQMYNQDDV LGISGDGNIN VEDLDASGET GEEEWQIL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] deduced N/A No confident structure predictions are available.
    2 View Details [95..478] PSI-BLAST 141.0 Structure of human Atg4b

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peptidase activity
    		•  4.90619850296986 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.64381885397949 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.75054525912786 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  3.05412701733177 bayes_pls_golite062009
  • hydrolase activity
    		•  2.66167923792227 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.13397229861051 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  2.06332547782769 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • tubulin binding
    		•  1.85112496470487 bayes_pls_golite062009
  • microtubule binding
    		•  1.82320858139311 bayes_pls_golite062009
  • binding
    		•  1.77258741259391 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  1.43988355875744 bayes_pls_golite062009
  • protein binding
    		•  1.08139200376412 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.913227912866975 bayes_pls_golite062009
  • transporter activity
    		•  0.69523261160023 bayes_pls_golite062009
  • DNA binding
    		•  0.683141655614916 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.667279936700542 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.467924587720185 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.439003000540428 bayes_pls_golite062009
  • structural molecule activity
    		•  0.297752217869698 bayes_pls_golite062009
  • calcium-dependent cysteine-type endopeptidase activity
    		•  0.196538841514154 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.125654358663332 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0241561776323942 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0199148741009585 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle