| Protein: | ATG4B_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 478 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG4B_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
624.0 | [0..1] | [468..272] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MTSLPDRGVS SSSSDPLCEG NIAPCSSSSE QKEDCSLKQS KTSILSCVFN SPFNIFEAHQ 60
61 DSSANKSPKS SSGSYDWSRV LRRIVCSGSM WRFL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [95-478] |
1 11 21 31 41 51
| | | | | |
1 GTSKVLTSSD VWFLGKCYKL SSEESSSDSD SESGHATFLE DFSSRIWITY RRGFDAISDS 60
61 KYTSDVNWGC MVRSSQMLVA QALIFHHLGR SWRRPLEKPY NPEYIGILHM FGDSEACAFS 120
121 IHNLLQAGNS YGLAAGSWVG PYAMCRAWQT LVRTNREQHE VVDGNESFPM ALYVVSGDED 180
181 GERGGAPVVC IDVAAQLCCD FNKGQSTWSP ILLLVPLVLG LDKINPRYIP LLKETFTFPQ 240
241 SLGILGGKPG TSTYIAGVQD DRALYLDPHE VQMAVDIAAD NIEADTSSYH CSTVRDLALD 300
301 LIDPSLAIGF YCRDKDDFDD FCSRATELVD KANGAPLFTV VQSVQPSKQM YNQDDVLGIS 360
361 GDGNINVEDL DASGETGEEE WQIL
|
| Detection Method: | |
| Confidence: | 141.0 |
| Match: | 2d1iA |
| Description: | Structure of human Atg4b |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.90619850296986 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.64381885397949 | bayes_pls_golite062009 |
| endopeptidase activity | 3.75054525912786 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| hydrolase activity | 2.66167923792227 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.13397229861051 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 2.06332547782769 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| tubulin binding | 1.85112496470487 | bayes_pls_golite062009 |
| microtubule binding | 1.82320858139311 | bayes_pls_golite062009 |
| binding | 1.77258741259391 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.43988355875744 | bayes_pls_golite062009 |
| protein binding | 1.08139200376412 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| nucleic acid binding | 0.913227912866975 | bayes_pls_golite062009 |
| transporter activity | 0.69523261160023 | bayes_pls_golite062009 |
| DNA binding | 0.683141655614916 | bayes_pls_golite062009 |
| transcription regulator activity | 0.667279936700542 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.439003000540428 | bayes_pls_golite062009 |
| structural molecule activity | 0.297752217869698 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.125654358663332 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0241561776323942 | bayes_pls_golite062009 |
| transcription factor activity | 0.0199148741009585 | bayes_pls_golite062009 |
