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Protein Overview: gi|34146798, gi|...

General Information:
Name(s) found: gi|62319442 [NCBI NR]
gi|34146798 [NCBI NR]
gi|30695589 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|62319442|dbj|BAD94796.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|34146798|gb|AAQ62407.1| At5g49010 [Arabidopsis thaliana] [NCBI NR]
  • gi|30695589|ref|NP_199712.2| SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 220 amino acids

    Gene Ontology:
    Cellular Component: GINS complex [ISS]
    Biological Process: DNA replication initiation [TAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNSEAGGS ADYETLMSTS DVELLKRAWR NEKAAPEILQ YEGALVDRAK EQIELVEETI  60
   61 EDYVENGIDP LVVSLYQMDL DRAQFLLRSY LRVRLLKIEK FMFHNLNSEE AERRLSEQEK 120
  121 VFATRCADDL AKHFEETVLL KLPENYQSVL KQSLISEVDD MVPQPHLDTF VVCRSKNFVS 180
  181 LNLYEEGESP ETVEMERGDL YFIRYKIVKR AIESGQIDLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..220] PSI-BLAST 62.69897 No description for 2e9xD was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3'-5' DNA helicase activity
    		•  3.30007058745861 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.7662250039458 bayes_pls_golite062009
  • binding
    		•  1.86366637427031 bayes_pls_golite062009
  • protein binding
    		•  1.52285169518311 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.2336233528067 bayes_pls_golite062009
  • helicase activity
    		•  1.2110072302388 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.406116199163083 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.350000641617868 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.33576520693158 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.333445385039412 bayes_pls_golite062009
  • catalytic activity
    		•  0.161911144249814 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle