YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24375608, gi|...

General Information:
Name(s) found: gi|24375608 [NCBI NR]
gi|24350505 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24375608|ref|NP_719651.1| primosomal protein N' [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350505|gb|AAN57095.1|AE015843_7 primosomal protein N' [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 737 amino acids

    Gene Ontology:
    Cellular Component: alpha DNA polymerase:primase complex [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: DNA replication origin binding [ISSLink to PubMed article]
    DNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFVEVALP VPMRQNFTYR VKTNEQNDDS PQAKPQIGVR VKVPFGRQQL IGLVTAITDS  60
   61 CDLAPTQLKS VIEFIDDAPL LPESLYKLTL WAARYYFCSQ GQMLTQALPV ALRKGLDAAP 120
  121 QKIQYWQITT IGSNIAPETL KRAPAQKKLL EHLKQTSLTQ EEVISLELNK TALKTLEEKG 180
  181 WIAQHEKIAQ LNLDWRSQLE LDETPHRLNK EQAVAVTVLT QQQGYHCTLL EGITGSGKTE 240
  241 VYLALLEHIL KQGKQALILV PEIGLTPQTI NRFKRRFRVN VAVLHSGLTD NQRLEAWRQA 300
  301 RCGQAAIIIG TRSALFTPMA FPGVIILDEE HDSSFKQQEG VGYHARDLAV MRGHLESIPV 360
  361 VLGSATPSLE SLQNALSGRY HHLQLGERAG NAKKVRQGII DIKNLPLKAG MSAPLINEIR 420
  421 SHLDAGNQVL LFLNRRGFAP ALLCHECGHL HECDRCDAFF TVHQSLGEIR CHHCGNQYAI 480
  481 PRQCHNCGST MLMGQGIGTE QLAEALQLEF PKYPVVRIDR DTTRLKGSLE SHLSAIHKGE 540
  541 YKILVGTQML AKGHHFPDVT LVGLLDVDGA LFSADFRAPE RFGQLYTQVA GRAGRANKLG 600
  601 TVLLQTHQSD NPILRDLLHR GYGEFARSQL KERQMALLPP AWHMVLVRAE AHSALDADNF 660
  661 LNSFASLLPQ DKEFEIIGPM PAPLDRKAGK FRRQLMFQAK HRHRLQQEFE RIYPLVEQLP 720
  721 EAKRCRWSLD RDPQDLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..737] PSI-BLAST 73.154902 Crystal structure of Escherichia coli transcription-repair coupling factor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA clamp loader activity
    		•  4.91429252297969 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  4.80695929076807 bayes_pls_golite062009
  • binding
    		•  3.20817609308002 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  2.72462789867829 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.2817164193758 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.2502397577006 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.19474222771129 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • DNA binding
    		•  2.03222535159295 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.88455339138556 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  0.971476020912368 bayes_pls_golite062009
  • DNA polymerase activity
    		•  0.928091843881235 bayes_pls_golite062009
  • transcription factor activity
    		•  0.802855430913287 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.782430219754236 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.6071273686445 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.18426050934025 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147579541298736 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.14606996093053 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.13050483816765 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.111293884322157 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.089234257580272 bayes_pls_golite062009
  • 3'-5' DNA helicase activity
    		•  0.0769112340058804 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle