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Protein Overview: gi|24373706, gi|...

General Information:
Name(s) found: gi|24373706 [NCBI NR]
gi|24348071 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1259 amino acids

    Gene Ontology:
    Cellular Component: exodeoxyribonuclease V complex [ISSLink to PubMed article]
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease V activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILPTTSQAL PLDPLTLPFG GSRLIEASAG TGKTYTISGL YLRLLLGDGL SEPLSCEQIL  60
   61 VVTFTNAATE ELRDRIRRRI QVAFKCFLGL EINDPFVQAL YDKTPESERA IALRRFDLAL 120
  121 KSLDEAAIFT IHGFCQRILA DLAFESSLLF ESDFTLDDSE FLHHAVRDFW REACYPLPEY 180
  181 LAQIIASEFG DPDGLVKQLR ALLGASEAKP LKPVQPFARL AESLSQSVQR FKLAWPRGRD 240
  241 ALLALLHSLP LNGQRFGKAS DNYPKLAEMF DQLDNFIAFG HGLPPLKVLE ALSLSELKLN 300
  301 KGGVLPSVSE APLLDHMEQL ATLINAIKPA FLFSAKQGIS ERFAKQKQLK NVLTPDDLLT 360
  361 TLAAAMLANP DTLPKAVASR FPVALIDEFQ DTDPLQFAIF SWIYQTRLGV KAQNSTAVEP 420
  421 KARTDSKLSL LMIGDPKQAI YAFRGADIYT YIEARRQTQA HYFLDTNYRS SRNLVAGVNH 480
  481 LFAQHPNPFI SQSIPFDRVK TPASAAAKQL VESTANSAAL RLKLLREGET GLNKASARQT 540
  541 LAEDTAAEIT RLLTEAANGQ CHTPKGPLIA KDIAILVRDR NEAAVMKTAL SKRQIGAVFL 600
  601 SRDSVFDTVE AREMALILRA LASPKDERAL RSALATALLG YSAEQIHAFN QDEEQRQMLL 660
  661 EQFFALHQIW QKRGIMPALL SLANATHMVA RLLQTPSVTA TADQDSEEPD EASNGERRLT 720
  721 DFRHLAELLQ QKATEIDGIS ALLNWYEQQL IDNTGTDEQQ LRLESEQNLV QIVTIHKSKG 780
  781 LEYPVCFIPF VSLARDNRRR PTPMLYHRTD ADGAQELVWD IEGTDEGWEQ AKQETLAEDL 840
  841 RLLYVALTRP VYLCYLYIAN HSRMLKAGIK SQLHETAIGY LLGVTDAGCD FARLHSAAQA 900
  901 LLNGVESNAQ AISVECVADN IADNKLHTGE TQSHTLNARN VTRQYRTPWR VGSYSGLVKN 960
  961 APHAKASPGA DDEVSAVFGA EPANSLSESS WQDSADVPQL PLLNRFSFER GANAGSFMHL1020
 1021 VLELIDFTQA KIDLPRELPK AMLQYGIAPE WQTVLQDWYM EILQAPLALM AQDNQLINPE1080
 1081 LCLAALVPQH TLVEMEFYLP LNRLKDAELN QLLGQFGYDT ALHFDELQGM LKGFIDLTFE1140
 1141 YQGKFYIADY KSNHLGDTIQ AYHYGALKQA ISDHRYDLQY ILYSLALHRY LAMRLPNYDY1200
 1201 DIHIGGCYYL FLRGMSVQYP GFGVYYDKPP KALILALDAL FNRSQDESHM SQQNTGAMA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1259] PSI-BLAST 166.0 RecBCD:DNA complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • deoxyribonuclease activity
    		•  8.38730628925026 bayes_pls_golite062009
  • exodeoxyribonuclease V activity
    		•  6.45399906372635 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  4.43302051910981 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  4.1611108835958 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  4.15362118941033 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  3.88121538069074 bayes_pls_golite062009
  • single-stranded DNA specific endodeoxyribonuclease activity
    		•  3.87045877570028 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  3.51963098050513 bayes_pls_golite062009
  • exonuclease activity
    		•  3.26822223300964 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  2.01277239394854 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.99560174672253 bayes_pls_golite062009
  • nuclease activity
    		•  1.92659045080864 bayes_pls_golite062009
  • endonuclease activity
    		•  1.6546965422816 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • damaged DNA binding
    		•  1.50475020123562 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18004254197954 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • binding
    		•  0.940513659936693 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • catalytic activity
    		•  0.816447099398022 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.796780585758145 bayes_pls_golite062009
  • DNA binding
    		•  0.779318309058729 bayes_pls_golite062009
  • protein binding
    		•  0.458550636208588 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.26252931460003 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  0.103710151681167 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle