| Protein: | gi|24373706, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 1259 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373706, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
718.0 | [0..1] | [1259..1] |
|
|
711.0 | [0..1] | [1244..1] |
|
|
709.0 | [0..1] | [1244..1] |
|
|
667.0 | [0..9] | [1241..16] |
|
|
660.0 | [0..13] | [1241..20] |
|
|
657.0 | [0..9] | [1242..22] |
|
|
632.0 | [0..4] | [1252..17] |
|
|
630.0 | [0..4] | [1252..17] |
|
|
630.0 | [0..4] | [1252..17] |
|
|
622.0 | [0..6] | [1252..19] |
|
Region A: Residues: [1-1259] |
1 11 21 31 41 51
| | | | | |
1 MILPTTSQAL PLDPLTLPFG GSRLIEASAG TGKTYTISGL YLRLLLGDGL SEPLSCEQIL 60
61 VVTFTNAATE ELRDRIRRRI QVAFKCFLGL EINDPFVQAL YDKTPESERA IALRRFDLAL 120
121 KSLDEAAIFT IHGFCQRILA DLAFESSLLF ESDFTLDDSE FLHHAVRDFW REACYPLPEY 180
181 LAQIIASEFG DPDGLVKQLR ALLGASEAKP LKPVQPFARL AESLSQSVQR FKLAWPRGRD 240
241 ALLALLHSLP LNGQRFGKAS DNYPKLAEMF DQLDNFIAFG HGLPPLKVLE ALSLSELKLN 300
301 KGGVLPSVSE APLLDHMEQL ATLINAIKPA FLFSAKQGIS ERFAKQKQLK NVLTPDDLLT 360
361 TLAAAMLANP DTLPKAVASR FPVALIDEFQ DTDPLQFAIF SWIYQTRLGV KAQNSTAVEP 420
421 KARTDSKLSL LMIGDPKQAI YAFRGADIYT YIEARRQTQA HYFLDTNYRS SRNLVAGVNH 480
481 LFAQHPNPFI SQSIPFDRVK TPASAAAKQL VESTANSAAL RLKLLREGET GLNKASARQT 540
541 LAEDTAAEIT RLLTEAANGQ CHTPKGPLIA KDIAILVRDR NEAAVMKTAL SKRQIGAVFL 600
601 SRDSVFDTVE AREMALILRA LASPKDERAL RSALATALLG YSAEQIHAFN QDEEQRQMLL 660
661 EQFFALHQIW QKRGIMPALL SLANATHMVA RLLQTPSVTA TADQDSEEPD EASNGERRLT 720
721 DFRHLAELLQ QKATEIDGIS ALLNWYEQQL IDNTGTDEQQ LRLESEQNLV QIVTIHKSKG 780
781 LEYPVCFIPF VSLARDNRRR PTPMLYHRTD ADGAQELVWD IEGTDEGWEQ AKQETLAEDL 840
841 RLLYVALTRP VYLCYLYIAN HSRMLKAGIK SQLHETAIGY LLGVTDAGCD FARLHSAAQA 900
901 LLNGVESNAQ AISVECVADN IADNKLHTGE TQSHTLNARN VTRQYRTPWR VGSYSGLVKN 960
961 APHAKASPGA DDEVSAVFGA EPANSLSESS WQDSADVPQL PLLNRFSFER GANAGSFMHL1020
1021 VLELIDFTQA KIDLPRELPK AMLQYGIAPE WQTVLQDWYM EILQAPLALM AQDNQLINPE1080
1081 LCLAALVPQH TLVEMEFYLP LNRLKDAELN QLLGQFGYDT ALHFDELQGM LKGFIDLTFE1140
1141 YQGKFYIADY KSNHLGDTIQ AYHYGALKQA ISDHRYDLQY ILYSLALHRY LAMRLPNYDY1200
1201 DIHIGGCYYL FLRGMSVQYP GFGVYYDKPP KALILALDAL FNRSQDESHM SQQNTGAMA
|
| Detection Method: |  |
| Confidence: | 166.0 |
| Match: | 1w36B |
| Description: | RecBCD:DNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| deoxyribonuclease activity | 8.38730628925026 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 6.45399906372635 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 4.43302051910981 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 4.1611108835958 | bayes_pls_golite062009 |
| exodeoxyribonuclease activity | 4.15362118941033 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 3.88121538069074 | bayes_pls_golite062009 |
| single-stranded DNA specific endodeoxyribonuclease activity | 3.87045877570028 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 3.51963098050513 | bayes_pls_golite062009 |
| exonuclease activity | 3.26822223300964 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.16381244011837 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.11265775498161 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.11046854230259 | bayes_pls_golite062009 |
| single-stranded DNA binding | 2.01277239394854 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.99560174672253 | bayes_pls_golite062009 |
| nuclease activity | 1.92659045080864 | bayes_pls_golite062009 |
| endonuclease activity | 1.6546965422816 | bayes_pls_golite062009 |
| ATPase activity | 1.53315090215319 | bayes_pls_golite062009 |
| damaged DNA binding | 1.50475020123562 | bayes_pls_golite062009 |
| hydrolase activity | 1.18004254197954 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.1653223755451 | bayes_pls_golite062009 |
| binding | 0.940513659936693 | bayes_pls_golite062009 |
| helicase activity | 0.895387263223335 | bayes_pls_golite062009 |
| catalytic activity | 0.816447099398022 | bayes_pls_golite062009 |
| DNA helicase activity | 0.8104901979223 | bayes_pls_golite062009 |
| nucleic acid binding | 0.796780585758145 | bayes_pls_golite062009 |
| DNA binding | 0.779318309058729 | bayes_pls_golite062009 |
| protein binding | 0.458550636208588 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.26252931460003 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.156322124775303 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.156322124775303 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.103710151681167 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.0398638249772338 | bayes_pls_golite062009 |
