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Protein Overview: gi|24372755, gi|...

General Information:
Name(s) found: gi|24372755 [NCBI NR]
gi|24346830 [NCBI NR]
Description(s) found:
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  • gi|24372755|ref|NP_716797.1| DNA polymerase III, delta subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346830|gb|AAN54242.1|AE015561_2 DNA polymerase III, delta subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • DNA polymerase III, delta subunit [Shewanella oneidensis MR-1]gi|24346830|gb|AAN54242.1| DNA polymerase III, delta subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • DNA polymerase III, delta subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 343 amino acids

    Gene Ontology:
    Cellular Component: DNA polymerase III complex [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVYPDQLSR HLNPLHACYL IFGDDPWLLE TSKDQIRQAA KRQGFEERVQ LIQETGFNWG  60
   61 DLTQEWQAMS LFSSRRIIEL TLPSAKPGAD GSAALQSLLQ TPSPDVLLIL EGPKLASEQT 120
  121 NSKWFKTLDS LGIYLPCTTP EGDQFRRWLD SRIAHFKLNL QPDARAMLYS LYEGNLLAAD 180
  181 QAMQLLQLLS PSKPIGADEL SHYFEDQSRF TVFQLTDALL NNRQDSAQHM LAQLNGEGTA 240
  241 MPILLWALFK ELQLLLSLKS EQAQGSPLNS LFGKHRIWDK RKPLYQTALQ RLSLAQIEHM 300
  301 LAFASKLELN LKQLGHEDWT GLSHLCLLFD PKAHSHLAHI NLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..343] PSI-BLAST 44.69897 delta subunit; delta subunit of DNA polymerase III, N-domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  6.09279996112705 bayes_pls_golite062009
  • DNA polymerase activity
    		•  6.04865791514294 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.99580940620614 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  3.94645534451735 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  3.91355858456767 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.2817164193758 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.23646936731119 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.88455339138556 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.77451606086272 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.49633029954726 bayes_pls_golite062009
  • catalytic activity
    		•  1.32370671504792 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2537888487362 bayes_pls_golite062009
  • transferase activity
    		•  1.23626141560528 bayes_pls_golite062009
  • binding
    		•  1.23424453635646 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • DNA binding
    		•  0.967303417236485 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.782430219754236 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.748437190903548 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.6071273686445 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.248432446853676 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.217252531553173 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.215962398124297 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.089234257580272 bayes_pls_golite062009
  • 3'-5' DNA helicase activity
    		•  0.0769112340058804 bayes_pls_golite062009
  • ATPase activity
    		•  0.0740243885501273 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle