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Protein Overview: gi|24346822, gi|...

General Information:
Name(s) found: gi|24372751 [NCBI NR]
gi|24346822 [NCBI NR]
Description(s) found:
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  • gi|24372751|ref|NP_716793.1| penicillin-binding protein 2 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346822|gb|AAN54238.1|AE015560_11 penicillin-binding protein 2 [Shewanella oneidensis MR-1] [NCBI NR]
  • penicillin-binding protein 2 [Shewanella oneidensis MR-1]gi|24346822|gb|AAN54238.1| penicillin-binding protein 2 [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • penicillin-binding protein 2 [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKKRITMH DHAAEASLFK RRALFTFFCV VALLSMLVTN LYHLQVESYK DYATRSNDNR  60
   61 IRVVPIAPSR GLIYDRNGVL LAENQPFYSL DLVPEKIANM SETLDELGKL IEISPDEREN 120
  121 FTEALKFHRR FKPLTLKNQL TEEQVAIFSV NQHRFPGITV EAGLKRNYPY VSQLTHVLGY 180
  181 VGKINTRDRA QLERNDQWKN YAATKDIGKQ GIEKFYESLL HGTPGHLEEE VNNRGRTIRT 240
  241 LKIVPPEPGQ DIYLTLDLQL QQKAVELLQG HKGSIVAIDP RDGGILALVS SPSYDPNQFV 300
  301 QGINRKDYSD LLNDKSRPLI NRATQGQYAP ASTVKPIIAL LGLDEKAVTE HTRIWDPGFW 360
  361 QIPGVERKYR DWKRWGHGWV NVYSAIVESC DTYFYELAYK IGVDPIARFM EQFGFGQNTG 420
  421 VDIFEESTGN MPSKEWKRLK YNQAWYIGDT ISVGIGQGYW TATPLQLASA TAILANNGRR 480
  481 FPPHLLKSIK DNTAKIDSPI NELPPIELKN PRNWKIINEA MRQTAHKSRF TDASYTAAMK 540
  541 TGTAQVIGVA ENTKYDANKI AEHFRDNALV VAYAPFENPK IVLAVVMENA GWGGANAGPV 600
  601 ARAMLDEYML RDTWKPTP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..618] PSI-BLAST 77.69897 Penicillin binding protein 2a (PBP2A), N-terminal domain; Penicillin binding protein 2a (PBP2A), middle domain; Penicillin binding protein 2a (PBP2A), C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • drug binding
    		•  3.43867028493374 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • hydrolase activity
    		•  1.90776959475284 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • peptidase activity
    		•  1.51270018803999 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  1.27480861613963 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  1.13698125224034 bayes_pls_golite062009
  • binding
    		•  1.11566650386305 bayes_pls_golite062009
  • serine hydrolase activity
    		•  0.402878339821269 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  0.392678049813626 bayes_pls_golite062009
  • exopeptidase activity
    		•  0.150639262435765 bayes_pls_golite062009
  • protein binding
    		•  0.0666688846338231 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle