YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346822, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	618 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346822, gi|....

Description	E-value	Query Range	Subject Range
gi\|82743365, gi\|... - gi\|82743365\|ref\|ZP_00906015.1\| Peptidoglycan glycosyltransferase [Shewanella sp. W3-18-1], gi\|827192... gi\|145565653, gi... - gi\|77816341\|ref\|ZP_00815536.1\| Peptidoglycan glycosyltransferase [Shewanella putrefaciens CN-32], gi...	558.0	[0..1]	[618..1]
gi\|78692434, gi\|... - gi\|78692434\|ref\|ZP_00856959.1\| Peptidoglycan glycosyltransferase [Shewanella sp. MR-7], gi\|78508163\|... gi\|113969335, gi... - gi\|82498654\|ref\|ZP_00884130.1\| Peptidoglycan glycosyltransferase [Shewanella sp. MR-4], gi\|82403350\|...	557.0	[0..1]	[618..1]
gi\|153001826, gi... - gi\|153001826\|ref\|YP_001367507.1\| peptidoglycan glycosyltransferase [Shewanella baltica OS185], gi\|15... gi\|126175475, gi... - gi\|126175475\|ref\|YP_001051624.1\| peptidoglycan glycosyltransferase [Shewanella baltica OS155], gi\|12... gi\|113908202, gi... - gi\|160876559\|ref\|YP_001555875.1\| peptidoglycan glycosyltransferase [Shewanella baltica OS195], gi\|16... gi\|217497414, gi... - gi\|217972279\|ref\|YP_002357030.1\| penicillin-binding protein 2 [Shewanella baltica OS223], gi\|2174974...	554.0	[0..1]	[618..1]
gi\|168826350, gi... - gi\|53728530\|ref\|ZP_00132490.2\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Hae...	541.0	[0..2]	[611..8]
gi\|68188778, gi\|... - gi\|91776844\|ref\|YP_546600.1\| peptidoglycan glycosyltransferase [Methylobacillus flagellatus KT], gi\|...	540.0	[0..2]	[615..1]
gi\|23466576, gi\|... - gi\|23466576\|ref\|ZP_00122164.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Hae...	540.0	[0..2]	[611..8]
gi\|24986566, gi\|... - gi\|26991487\|ref\|NP_746912.1\| penicillin-binding protein 2 [Pseudomonas putida KT2440], gi\|24986566\|g...	539.0	[0..4]	[618..2]
tr\|E4R6Z4\|E4R6Z4... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4590 PE=4 SV=1 gi\|148549884, gi... - gi\|82738228\|ref\|ZP_00901065.1\| penicillin-binding protein 2 [Pseudomonas putida F1], gi\|82714724\|gb\|... tr\|I7BZF2\|I7BZF2... - Peptidoglycan glycosyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3684 PE=4 SV=1	538.0	[0..4]	[618..2]
gi\|48728977, gi\|... - gi\|77461191\|ref\|YP_350698.1\| peptidoglycan glycosyltransferase [Pseudomonas fluorescens Pf0-1], gi\|7...	537.0	[0..4]	[612..2]
gi\|78359194, gi\|... - gi\|78368753\|ref\|ZP_00838960.1\| Peptidoglycan glycosyltransferase [Shewanella sp. PV-4], gi\|78359194\|...	535.0	[0..1]	[615..1]

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Predicted Domain #1

Region A:
Residues: [1-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKKRITMH DHAAEASLFK RRALFTFFCV VALLSMLVTN LYHLQVESYK DYATRSNDNR  60
   61 IRVVPIAPSR GLIYDRNGVL LAENQPFYSL DLVPEKIANM SETLDELGKL IEISPDEREN 120
  121 FTEALKFHRR FKPLTLKNQL TEEQVAIFSV NQHRFPGITV EAGLKRNYPY VSQLTHVLGY 180
  181 VGKINTRDRA QLERNDQWKN YAATKDIGKQ GIEKFYESLL HGTPGHLEEE VNNRGRTIRT 240
  241 LKIVPPEPGQ DIYLTLDLQL QQKAVELLQG HKGSIVAIDP RDGGILALVS SPSYDPNQFV 300
  301 QGINRKDYSD LLNDKSRPLI NRATQGQYAP ASTVKPIIAL LGLDEKAVTE HTRIWDPGFW 360
  361 QIPGVERKYR DWKRWGHGWV NVYSAIVESC DTYFYELAYK IGVDPIARFM EQFGFGQNTG 420
  421 VDIFEESTGN MPSKEWKRLK YNQAWYIGDT ISVGIGQGYW TATPLQLASA TAILANNGRR 480
  481 FPPHLLKSIK DNTAKIDSPI NELPPIELKN PRNWKIINEA MRQTAHKSRF TDASYTAAMK 540
  541 TGTAQVIGVA ENTKYDANKI AEHFRDNALV VAYAPFENPK IVLAVVMENA GWGGANAGPV 600
  601 ARAMLDEYML RDTWKPTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.69897
Match:	1mwrA
Description:	Penicillin binding protein 2a (PBP2A), N-terminal domain; Penicillin binding protein 2a (PBP2A), middle domain; Penicillin binding protein 2a (PBP2A), C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
drug binding	3.43867028493374	bayes_pls_golite062009
serine-type D-Ala-D-Ala carboxypeptidase activity	3.12650314537616	bayes_pls_golite062009
penicillin binding	2.89507018520983	bayes_pls_golite062009
serine-type carboxypeptidase activity	2.70174066798582	bayes_pls_golite062009
serine-type exopeptidase activity	2.69091897402517	bayes_pls_golite062009
carboxypeptidase activity	1.96547160092829	bayes_pls_golite062009
hydrolase activity	1.90776959475284	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
peptidase activity	1.51270018803999	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.27480861613963	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.13698125224034	bayes_pls_golite062009
binding	1.11566650386305	bayes_pls_golite062009
serine hydrolase activity	0.402878339821269	bayes_pls_golite062009
serine-type peptidase activity	0.392678049813626	bayes_pls_golite062009
exopeptidase activity	0.150639262435765	bayes_pls_golite062009
protein binding	0.0666688846338231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: