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Protein Overview: SWC4_YEAST

General Information:
Name(s) found: SWC4_YEAST [Swiss-Prot]
Description(s) found:
  • SWR1-complex protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWC4 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 476 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSDIFDVL NIKQKSRSPT NGQVSVPSSS AANRPKPQVT GMQRELFNLL GENQPPVVIK  60
   61 SGNNFKEKML STSKPSPWSF VEFKANNSVT LRHWVKGSKE LIGDTPKESP YSKFNQHLSI 120
  121 PSFTKEEYEA FMNENEGTQK SVESEKNHNE NFTNEKKDES KNSWSFEEIE YLFNLCKKYD 180
  181 LRWFLIFDRY SYNNSRTLED LKEKFYYTCR NYFKASDPSN PLLSSLNFSA EKEIERKKYL 240
  241 QRLLSRSAAE IAEEEALVVE SKKFEMAAKR TLAERESLLR LLDSPHSDQT ITQYLTSQGM 300
  301 SQLYNALLAD KTRKRKHDLN IPENPWMKQQ QQFAQHRQLQ QLNVKKSEVK ENLSPKKTKR 360
  361 QRQEMQTALK RKSESAYAEQ LLKDFNSDER KALGVITHGE KLSPGVYLRS TKLSTFKPAL 420
  421 QNKILAILQE LSLPSRPVMP SFDVMERQEE LLKKINTLID LKKHVDKYEA GMSITK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] deduced N/A No confident structure predictions are available.
    2 View Details [161..221] Pfam 3.568636 Myb-like DNA-binding domain No confident structure predictions are available.
    3 View Details [222..476] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • histone acetyltransferase activity
    		•  5.78270240334849 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  5.78270240334849 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.53404381270892 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.38345537045529 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.81897719505269 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35931919126926 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.31384699789032 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.09869056563841 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.05971315776284 bayes_pls_golite062009
  • DNA binding
    		•  2.98143466641891 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.85666780317594 bayes_pls_golite062009
  • binding
    		•  2.77786931095369 bayes_pls_golite062009
  • transcription factor activity
    		•  2.3234819540139 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.5871271401402 bayes_pls_golite062009
  • chromatin binding
    		•  1.46306211220814 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.23729321119532 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23476914879396 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18710646783152 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.02200659886159 bayes_pls_golite062009
  • protein binding
    		•  1.00288283679871 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.700409976805769 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.658518317984762 bayes_pls_golite062009
  • transcription activator activity
    		•  0.58607600202198 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.559482273209868 bayes_pls_golite062009
  • deacetylase activity
    		•  0.534082291544628 bayes_pls_golite062009
  • histone binding
    		•  0.489784140732052 bayes_pls_golite062009
  • transcription factor binding
    		•  0.270053518126008 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.244471307852075 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.233668696331578 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.192832786095412 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.151335943405565 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.0110175210304684 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle