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Protein Overview: SC160_YEAST

General Information:
Name(s) found: SC160_YEAST [Swiss-Prot]
Description(s) found:
  • Protein SCP160 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCP160 PE=1 SV=3 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 1222 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEQTAIDS PPSTVEGSVE TVTTIDSPST TASTIAATAE EHPQLEKKPT PLPSLKDLPS  60
   61 LGSNAAFANV KVSWGPNMKP AVSNSPSPSP SAPSLTTGLG AKRMRSKNIQ EAFTLDLQSQ 120
  121 LSITKPELSR IVQSVKKNHD VSVESTLSKN ARTFLVSGVA ANVHEAKREL VKKLTKPINA 180
  181 VIEVPSKCKA SIIGSGGRTI REISDAYEVK INVSKEVNEN SYDEDMDDTT SNVSLFGDFE 240
  241 SVNLAKAKIL AIVKEETKNA TIKLVVEDEK YLPYIDVSEF ASDEGDEEVK VQFYKKSGDI 300
  301 VILGPREKAK ATKTSIQDYL KKLASNLDEE KVKIPSKFQF LIDAEELKEK YNVIVTFPST 360
  361 PDDELVSFVG LRDKVGEAIT YARSSSKSYV VESLDISKAH SKNLTHAKNL IMYFTKYSVL 420
  421 KGLEESHPNV KISLPSIQSL PTAETVTIHI SAKSDEANDI KAVRKELISF VNNIPPSETL 480
  481 VITDLDYELF GGSIKHCLLA SESSVAFVQF GDYYPNDNSI LLVALTEDED FKPSIEEIQA 540
  541 SLNKANESLN SLRTKQNNME TKTYEFSEEV QDSLFKPSSA TWKLIMEDIS EQEGHLQIKL 600
  601 HTPEENQLTV RGDEKAAKAA NKIFESILNS PSSKSKMTVN IPANSVARLI GNKGSNLQQI 660
  661 REKFACQIDI PNEENNNASK DKTVEVTLTG LEYNLTHAKK YLAAEAKKWA DIITKELIVP 720
  721 VKFHGSLIGP HGTYRNRLQE KYNVFINFPR DNEIVTIRGP SRGVNKAHEE LKALLDFEME 780
  781 NGHKMVINVP AEHVPRIIGK NGDNINDIRA EYGVEMDFLQ KSTDPKAQET GEVELEITGS 840
  841 RQNIKDAAKR VESIVAEASD FVTEVLKIDH KYHKSIVGSG GHILREIISK AGGEEIRNKS 900
  901 VDIPNADSEN KDITVQGPQK FVKKVVEEIN KIVKDAENSV TKTIDIPAER KGALIGPGGI 960
  961 VRRQLESEFN INLFVPNKDD PSGKITITGA PENVEKAEKK ILNEIIRENF DREVDVPASI1020
 1021 YEYVSERGAF IQKLRMDLSV NVRFGNTSKK ANKLARAPIE IPLEKVCGST EGENAEKTKF1080
 1081 TIEEVGAPTS SEEGDITMRL TYEPIDLSSI LSDGEEKEVT KDTSNDSAKK EEALDTAVKL1140
 1141 IKERIAKAPS ATYAGYVWGA DTRRFNMIVG PGGSNIKKIR EAADVIINVP RKSDKVNDVV1200
 1201 YIRGTKAGVE KAGEMVLKSL RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] MSA 1.045986 View MSA. No confident structure predictions are available.
    2 View Details [172..266] PSI-BLAST 7.522879 RNA splicing factor 1
    3 View Details [267..339] deduced N/A Confident ab initio structure predictions are available.
    4 View Details [340..417] PSI-BLAST 3.221849 S1 domain of NusA; Transcription factor NusA, C-terminal domains; Transcription factor NusA, N-terminal domain
    5 View Details [418..483] PSI-BLAST 44.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    6 View Details [484..508]
    [643..701]    		 PSI-BLAST 44.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    7 View Details [509..642]
    [702..849]    		 PSI-BLAST 44.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    8 View Details [850..941] ORFEUS 11.56 HnRNP K, KH3
    9 View Details [942..1010] PSI-BLAST 32.383689 Vigilin, KH6
    10 View Details [1011..1082] PSI-BLAST 3.39794 S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase
    11 View Details [1083..1148] PSI-BLAST 18.045757 Far upstream binding element, FBP, KH3 and KH4 domains
    12 View Details [1149..1222] PSI-BLAST 18.045757 Far upstream binding element, FBP, KH3 and KH4 domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  4.12546383654586 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.94829960615623 bayes_pls_golite062009
  • binding
    		•  2.88506305420422 bayes_pls_golite062009
  • mRNA binding
    		•  2.56780637687327 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92947291634926 bayes_pls_golite062009
  • DNA binding
    		•  1.60641898958006 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.48649836219447 bayes_pls_golite062009
  • protein binding
    		•  1.09698608157472 bayes_pls_golite062009
  • signal transducer activity
    		•  1.00592302262807 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.00592302262807 bayes_pls_golite062009
  • transcription factor activity
    		•  0.693474044974507 bayes_pls_golite062009
  • catalytic activity
    		•  0.1435046019283 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
    		•  4.53756130039297 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.20349765519502 bayes_pls_golite062009
  • binding
    		•  3.03029468866374 bayes_pls_golite062009
  • mRNA binding
    		•  2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94297875367222 bayes_pls_golite062009
  • DNA binding
    		•  1.62328996594128 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.56066397370123 bayes_pls_golite062009
  • protein binding
    		•  1.16541072642796 bayes_pls_golite062009
  • signal transducer activity
    		•  1.00684766673868 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.00684766673868 bayes_pls_golite062009
  • transcription factor activity
    		•  0.687475481524107 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
    		• 0.0350881281129536 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • structural constituent of ribosome
    		•  3.83603737358696 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.74935939787001 bayes_pls_golite062009
  • structural molecule activity
    		•  3.27216171079692 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.97035850468348 bayes_pls_golite062009
  • RNA binding
    		•  1.82714562401326 bayes_pls_golite062009
  • binding
    		•  1.5466198129438 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.53584399356788 bayes_pls_golite062009
  • DNA binding
    		•  1.42930679560452 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.805620048597073 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.621577761289592 bayes_pls_golite062009
  • transcription factor activity
    		•  0.599956044396141 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.55247451742813 bayes_pls_golite062009
  • protein binding
    		•  0.523813050066193 bayes_pls_golite062009
  • deacetylase activity
    		•  0.446316761887039 bayes_pls_golite062009
  • ATPase activity
    		•  0.368110506118156 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.31569932728929 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.2703049141847 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.256048137250105 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.237784820115582 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.235837031080758 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.20814642097724 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.2080607201312 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.19299160134668 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.158428921465478 bayes_pls_golite062009
  • catalytic activity
    		•  0.10089766806364 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  0.0992081031610161 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0481402103729352 bayes_pls_golite062009
    7
    Term Confidence Notes
  • RNA binding
    		•  4.12546383654586 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.94829960615623 bayes_pls_golite062009
  • binding
    		•  2.88506305420422 bayes_pls_golite062009
  • mRNA binding
    		•  2.56780637687327 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92947291634926 bayes_pls_golite062009
  • DNA binding
    		•  1.60641898958006 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.48649836219447 bayes_pls_golite062009
  • protein binding
    		•  1.09698608157472 bayes_pls_golite062009
  • signal transducer activity
    		•  1.00592302262807 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.00592302262807 bayes_pls_golite062009
  • transcription factor activity
    		•  0.693474044974507 bayes_pls_golite062009
  • catalytic activity
    		•  0.1435046019283 bayes_pls_golite062009
    8
    Term Confidence Notes
  • RNA binding
    		•  4.53756130039297 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.20349765519502 bayes_pls_golite062009
  • binding
    		•  3.03029468866374 bayes_pls_golite062009
  • mRNA binding
    		•  2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94297875367222 bayes_pls_golite062009
  • DNA binding
    		•  1.62328996594128 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.56066397370123 bayes_pls_golite062009
  • protein binding
    		•  1.16541072642796 bayes_pls_golite062009
  • signal transducer activity
    		•  1.00684766673868 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.00684766673868 bayes_pls_golite062009
  • transcription factor activity
    		•  0.687475481524107 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
    		• 0.0350881281129536 bayes_pls_golite062009
    9
    Term Confidence Notes
  • structural constituent of ribosome
    		•  3.72252697400364 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.7132569326175 bayes_pls_golite062009
  • structural molecule activity
    		•  3.13468682204566 bayes_pls_golite062009
  • DNA binding
    		•  3.12689559879854 bayes_pls_golite062009
  • binding
    		•  2.40532042551671 bayes_pls_golite062009
  • RNA binding
    		•  1.76502371106766 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.50283169429524 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.10289736160471 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.96886436248958 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.805620048597073 bayes_pls_golite062009
  • transcription factor activity
    		•  0.599956044396141 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.55247451742813 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.498439111185072 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.3506031439435 bayes_pls_golite062009
  • translation regulator activity
    		•  0.31332179848255 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.263197317040851 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.2080607201312 bayes_pls_golite062009
  • nuclease activity
    		•  0.17660139576327 bayes_pls_golite062009
  • protein binding
    		•  0.152645195799531 bayes_pls_golite062009
    10
    Term Confidence Notes
  • RNA binding
    		•  4.53756130039297 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.20349765519502 bayes_pls_golite062009
  • binding
    		•  3.03029468866374 bayes_pls_golite062009
  • mRNA binding
    		•  2.96669269799942 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.94297875367222 bayes_pls_golite062009
  • DNA binding
    		•  1.62328996594128 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.56066397370123 bayes_pls_golite062009
  • protein binding
    		•  1.16541072642796 bayes_pls_golite062009
  • signal transducer activity
    		•  1.00684766673868 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.00684766673868 bayes_pls_golite062009
  • transcription factor activity
    		•  0.687475481524107 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
    		• 0.0350881281129536 bayes_pls_golite062009
    11 No functions predicted.
    12 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle