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Protein Overview: ubc-17

General Information:
Name(s) found: ubc-17 / CE37602 [WormBase]
Description(s) found:
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  • WBGene00006712 locus:ubc-17 ubiquitin-conjugating enzyme status:Partially_confirmed UniProt:Q11076 protein_id:CCD61841.1 [WormBase]
  • gi|71981623|ref|NP_509188.2| UBiquitin Conjugating enzyme family member (ubc-17) [Caenorhabditis elegans] [NCBI NR]
  • gi|68065484|sp|Q11076.2|UBC17_CAEEL RecName: Full=Probable ubiquitin-conjugating enzyme protein 17 [NCBI NR]
  • gi|54027984|gb|AAC47063.2| Ubiquitin conjugating enzyme protein 17 [Caenorhabditis elegans] [NCBI NR]
  • Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2 [Swiss-Prot]
  • Ubiquitin conjugating enzyme protein 17 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE37602 WBGene00006712 locus:ubc-17 ubiquitin-conjugating enzyme status:Partially_confirmed SW:Q11076 protein_id:AAC47063.2 [wormpep150.fasta]
  • 37602 WBGene00006712 locus:ubc-17 ubiquitin-conjugating enzyme status:Partially_confirmed SW:Q11076 protein_id:AAC47063.2 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE37602 WBGene00006712 locus:ubc-17 ubiquitin-conjugating enzyme status:Partially_confirmed UniProt:UBC17_CAEEL protein_id:AAC47063.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE37602 WBGene00006712 locus:ubc-17 ubiquitin-conjugating enzyme status:Partially_confirmed UniProt:UBC17_CAEEL protein_id:AAC47063.2| [wormORF-contam.fasta]
  • Probable ubiquitin-conjugating enzyme protein 17 [nr-271106-contam.fasta]
  • UBiquitin Conjugating enzyme family member (ubc-17) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE37602 WBGene00006712 locus:ubc-17 ubiquitin-conjugating enzyme status:Partially_confirmed UniProt:Q11076 protein_id:AAC47063.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 679 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEALink to PubMed article]
    ubiquitin cycle [IEALink to PubMed article]
    Molecular Function: small conjugating protein ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQASQRSS STSAVAQKTR ERRKSKSRRR CWFGCLWLSS RVSLIRSSSR FSRSPEPDES  60
   61 LTAIDKVMSI INEKPLKMAH ILKTARYNPR FLPKINNHFY RRFVNDVSFS ERKQFVECGV 120
  121 IHHLLELIGE TAISDFSASS RSADEQKRRA RRNSSASLSH KGTGYGTGST RSRWDIERTV 180
  181 EEKLIREEHL TWLLSILNSF MLGWPTTDNL KTKPEELVHM TEIAIKLIAD SSVLSILEYN 240
  241 LRNDSFFDAL LETAASMAAT PGLVPFLVRP YTSSAKSIAK ELIPRFKENI LSIQARWGGT 300
  301 LEETNFRMAE FTAKVTLLSD YVINAARAYE QTLPPEQRIQ TATHRRPSHS GLHSKMQGPK 360
  361 DDETIYKNKM QELQLQTAKF IGDFGKLCVP YVFRKEAKNI NPFSPHLRDR TKRIAKELAS 420
  421 IANALPLNAS NSIYVCYDEG RVDIIKVLIS GPDDTPYANG LFEFDIFFPT GYPFSPPKCA 480
  481 FLTTGSGNVR FNPNLYNDGK ICLSILGTWE GRPEEKWNPY CSLMQVLVSI QEVIEKHLWL 540
  541 KREAILKQAQ AWIDNVSNDF GDDKMSKRKD VFAFETGFNP ATQERVIHNL IQELQAMQSP 600
  601 FAKEEAEESE RLKREQSEKE EKQKKEAAAL AEIEREKREL ELDFQRRRSS VLATHVAVIR 660
  661 TQPTGDYSVP SVNEPSTSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] deduced N/A No confident structure predictions are available.
    2 View Details [150..399] MSA 2.068982 View MSA. No confident structure predictions are available.
    3 View Details [400..578] PSI-BLAST 44.09691 No description for 2c4oA was found.
    4 View Details [579..679] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  7.07009148420636 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  7.03976510657099 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  6.00007452476109 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  5.06177413452771 bayes_pls_golite062009
  • ligase activity
    		•  1.88059319399119 bayes_pls_golite062009
  • protein binding
    		•  1.77678273247394 bayes_pls_golite062009
  • binding
    		•  1.75350658654805 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.46828741962969 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.42147247383136 bayes_pls_golite062009
  • DNA binding
    		•  1.31679667558286 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.905654666464382 bayes_pls_golite062009
  • catalytic activity
    		•  0.891402822028799 bayes_pls_golite062009
  • SUMO ligase activity
    		•  0.843488104298821 bayes_pls_golite062009
  • transcription activator activity
    		•  0.827751482920916 bayes_pls_golite062009
  • NEDD8 ligase activity
    		•  0.715654744941217 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.58835335751383 bayes_pls_golite062009
  • kinase activity
    		•  0.519703305315987 bayes_pls_golite062009
  • protein kinase activity
    		•  0.443948654247666 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.373779304908933 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.182854082413338 bayes_pls_golite062009
  • transferase activity
    		•  0.0984525836903841 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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