YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|22137072, gi|...

General Information:
Name(s) found: gi|23397226 [NCBI NR]
gi|22137072 [NCBI NR]
gi|18400634 [NCBI NR]
gi|13605690 [NCBI NR]
Description(s) found:
Found 13 descriptions.
SHOW ALL
  • gi|23397226|gb|AAN31895.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22137072|gb|AAM91381.1| At1g42440/F7F22_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|18400634|ref|NP_564480.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13605690|gb|AAK32838.1|AF361826_1 At1g42440/F7F22_7 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 793 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: ribosome biogenesis [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRVQVNK AHKTRFSSKS SRNLHRTNLQ DSGRIGKSDS NYVKGAKAAR VQRGKMLREQ  60
   61 KRAAVLKEKR ASGGINSAPR VIVLFPLSAS VELNSLGEDV LKLLSSDGSG IASSTVASSE 120
  121 YKLRATVLKA PHGDLLTCME MAKVADLMAF VASASAPWEE NSSNFIDSFG SQCLSVFRSI 180
  181 GLPSTTVLIR DLPSDVKKKN EMKKMCASQL ASEFPEDCKF YPADTRDELH KFMWLFKAQR 240
  241 LTVPHWRSQR SYIVARKAGM LVDDESSGKC TLLLSGYLRA RKLSVNQLVH VSGVGDFQFS 300
  301 KIEVLKDPFP LNERKNQNSM ELDDSHDEEV LKSLVPDPMK QEPLVIENTP DPLAGEQTWP 360
  361 TEEEMAEADK NQKQGRLKKK TLPRGTSEYQ AAWIVDETDE EDSDNGDSDD NGMVLDRGED 420
  421 SNQEGMYDQE FEDDGKSLNL RDIDTETQNE SEMVDDEDLT EEQIKDEIKK IKEAYADDEE 480
  481 FPDEVETPID VPARRRFAKY RGLKSFRTSS WDPNESLPQD YARIFAFDNV ARTQKLVLKQ 540
  541 ALKMEEEDRD DCVPIGSYVR LHIKEVPLGA ASKLSSLVNT TKPIIGFGLL QHESKMSVLH 600
  601 FSVKKYDGYE APIKTKEELM FHVGFRQFIA RPVFATDNFS SDKHKMERFL HPGCFSLASI 660
  661 YGPISFPPLP LVVLKISEGS DPPAIAALGS LKSVEPNKII LKKIILTGYP QRVSKMKASV 720
  721 RYMFHNPEDV KWFKPVEVWS KCGRRGRVKE PVGTHGAMKC IFNGVVQQHD VVCMNLYKRA 780
  781 YPKWPERLYP QLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..651] FFAS03 1.03 Initiation factor IF2/eIF5b, domains 2 and 4; Initiation factor IF2/eIF5b, domain 3; Initiation factor IF2/eIF5b, N-terminal (G) domain
    2 View Details [652..793] MSA 3.092966 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.03929893278091 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.83436828342313 bayes_pls_golite062009
  • RNA binding
    		•  1.64085862208961 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.58614825683861 bayes_pls_golite062009
    		• 1.40793830270505 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.19425264627559 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.16223608981327 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.13639104386803 bayes_pls_golite062009
  • DNA binding
    		•  1.10928092522596 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.02050154675732 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • protein binding
    		•  0.732850774969074 bayes_pls_golite062009
  • structural molecule activity
    		•  0.675553718290749 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.661839640945953 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.561205936947495 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.561205936947495 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.560259345938113 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.548961899256767 bayes_pls_golite062009
  • motor activity
    		•  0.404014260980385 bayes_pls_golite062009
  • helicase activity
    		•  0.389068221426991 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.191068703418711 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.188196054823553 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.184212465168396 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147137984163853 bayes_pls_golite062009
  • translation regulator activity
    		•  0.131777720438502 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.115477876052352 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0836981407579493 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.00923819887025079 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle