| Protein: | gi|22137072, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 793 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22137072, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
856.0 | [0..1] | [793..1] |
|
Region A: Residues: [1-651] |
1 11 21 31 41 51
| | | | | |
1 MGRSRVQVNK AHKTRFSSKS SRNLHRTNLQ DSGRIGKSDS NYVKGAKAAR VQRGKMLREQ 60
61 KRAAVLKEKR ASGGINSAPR VIVLFPLSAS VELNSLGEDV LKLLSSDGSG IASSTVASSE 120
121 YKLRATVLKA PHGDLLTCME MAKVADLMAF VASASAPWEE NSSNFIDSFG SQCLSVFRSI 180
181 GLPSTTVLIR DLPSDVKKKN EMKKMCASQL ASEFPEDCKF YPADTRDELH KFMWLFKAQR 240
241 LTVPHWRSQR SYIVARKAGM LVDDESSGKC TLLLSGYLRA RKLSVNQLVH VSGVGDFQFS 300
301 KIEVLKDPFP LNERKNQNSM ELDDSHDEEV LKSLVPDPMK QEPLVIENTP DPLAGEQTWP 360
361 TEEEMAEADK NQKQGRLKKK TLPRGTSEYQ AAWIVDETDE EDSDNGDSDD NGMVLDRGED 420
421 SNQEGMYDQE FEDDGKSLNL RDIDTETQNE SEMVDDEDLT EEQIKDEIKK IKEAYADDEE 480
481 FPDEVETPID VPARRRFAKY RGLKSFRTSS WDPNESLPQD YARIFAFDNV ARTQKLVLKQ 540
541 ALKMEEEDRD DCVPIGSYVR LHIKEVPLGA ASKLSSLVNT TKPIIGFGLL QHESKMSVLH 600
601 FSVKKYDGYE APIKTKEELM FHVGFRQFIA RPVFATDNFS SDKHKMERFL H
|
| Detection Method: |  |
| Confidence: | 1.03 |
| Match: | 1g7rA |
| Description: | Initiation factor IF2/eIF5b, domains 2 and 4; Initiation factor IF2/eIF5b, domain 3; Initiation factor IF2/eIF5b, N-terminal (G) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.03929893278091 | bayes_pls_golite062009 |
| nucleic acid binding | 1.83436828342313 | bayes_pls_golite062009 |
| RNA binding | 1.64085862208961 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.58614825683861 | bayes_pls_golite062009 |
| 1.40793830270505 | bayes_pls_golite062009 | |
| RNA helicase activity | 1.19425264627559 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.16223608981327 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.13639104386803 | bayes_pls_golite062009 |
| DNA binding | 1.10928092522596 | bayes_pls_golite062009 |
| transcription regulator activity | 1.02050154675732 | bayes_pls_golite062009 |
| catalytic activity | 0.942640875796745 | bayes_pls_golite062009 |
| protein binding | 0.732850774969074 | bayes_pls_golite062009 |
| structural molecule activity | 0.675553718290749 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.661839640945953 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 0.561205936947495 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.561205936947495 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 0.560259345938113 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.548961899256767 | bayes_pls_golite062009 |
| motor activity | 0.404014260980385 | bayes_pls_golite062009 |
| helicase activity | 0.389068221426991 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.191068703418711 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.188196054823553 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.184212465168396 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147137984163853 | bayes_pls_golite062009 |
| translation regulator activity | 0.131777720438502 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.115477876052352 | bayes_pls_golite062009 |
| transcription factor activity | 0.0836981407579493 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.0655945570748848 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.0655945570748848 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.00923819887025079 | bayes_pls_golite062009 |
|
Region A: Residues: [652-793] |
1 11 21 31 41 51
| | | | | |
1 PGCFSLASIY GPISFPPLPL VVLKISEGSD PPAIAALGSL KSVEPNKIIL KKIILTGYPQ 60
61 RVSKMKASVR YMFHNPEDVK WFKPVEVWSK CGRRGRVKEP VGTHGAMKCI FNGVVQQHDV 120
121 VCMNLYKRAY PKWPERLYPQ LL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
