Protein Overview: 4CLL5_ARATH

General Information:
Name(s) found:	4CLL5_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|18394871\|ref\|NP_564115.1\| OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase [Arabidopsis thaliana] [NCBI NR] gi\|158564046\|sp\|Q84P21.2\|4CLL5_ARATH RecName: Full=4-coumarate--CoA ligase-like 5; AltName: Full=4-coumarate--CoA ligase isoform 9; Short=At4CL9; AltName: Full=Peroxisomal OPC-8:0-CoA ligase 1 [NCBI NR] gi\|14532846\|gb\|AAK64105.1\| unknown protein [Arabidopsis thaliana] [NCBI NR] gi\|13430676\|gb\|AAK25960.1\|AF360250_1 unknown protein [Arabidopsis thaliana] [NCBI NR] gi\|116490123\|gb\|ABJ98946.1\| peroxisomal OPC-8:0 CoA ligase [Arabidopsis thaliana] [NCBI NR] 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2 [Swiss-Prot] unknown protein [Arabidopsis thaliana]gi\|13430676\|gb\|AAK25960.1\| unknown protein [Arabidopsis thaliana]gi\|18394871\|ref\|NP_564115.1\| 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 4-coumarate--CoA ligase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: OPCL1 \| OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase \| chr1:7103635-7105846 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta] 4-coumarate-CoA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta] peroxisomal OPC-8:0 CoA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: OPCL1 \| OPC-8:0 CoA ligase1 \| chr1:7103645-7105856 REVERSE LENGTH=546 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	546 amino acids
Gene Ontology:
Cellular Component:	peroxisome [IDA]
Biological Process:	jasmonic acid biosynthetic process [IMP] response to wounding [IEP] phenylpropanoid metabolic process [ISS]
Molecular Function:	4-coumarate-CoA ligase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF  60
   61 TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL SVMSLGAIIT TTNPLNTSNE 120
  121 IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN 180
  181 RVKERVDQDD TATLLYSSGT TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM 240
  241 FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI 300
  301 KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR 360
  361 YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM KGYFSNEEAT SSTLDSEGWL 420
  421 RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG 480
  481 QFPMAYVVRK TGSSLSEKTI MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA 540
  541 TSNSKL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

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Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
ligase activity, forming carbon-sulfur bonds	5.10123876514454	bayes_pls_golite062009
fatty acid ligase activity	4.83067429373059	bayes_pls_golite062009
long-chain fatty acid-CoA ligase activity	4.72692389032116	bayes_pls_golite062009
acetate-CoA ligase activity	4.48129067128523	bayes_pls_golite062009
acid-thiol ligase activity	4.28278725989432	bayes_pls_golite062009
CoA-ligase activity	4.12850865352867	bayes_pls_golite062009
fatty acid transporter activity	4.0887382758527	bayes_pls_golite062009
Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	2.74744781333102	bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	2.74744781333102	bayes_pls_golite062009
luciferin monooxygenase activity	2.67396462766343	bayes_pls_golite062009
long-chain fatty acid transporter activity	2.6732077818749	bayes_pls_golite062009
lipid transporter activity	2.59608399999188	bayes_pls_golite062009
ligase activity	2.49556073715112	bayes_pls_golite062009
transcription regulator activity	2.31193176808353	bayes_pls_golite062009
catalytic activity	1.83545185797733	bayes_pls_golite062009
binding	1.5312519256537	bayes_pls_golite062009
transporter activity	1.29780964436121	bayes_pls_golite062009
transcription repressor activity	1.2638869228049	bayes_pls_golite062009
transmembrane transporter activity	1.07143339827205	bayes_pls_golite062009
substrate-specific transporter activity	1.03753946113449	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.54797726647835	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.464663038956639	bayes_pls_golite062009
active transmembrane transporter activity	0.251681382273558	bayes_pls_golite062009
primary active transmembrane transporter activity	0.225448500718996	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.216579620878492	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.177812048124158	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.174283007890308	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.173963339749644	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0401881910649647	bayes_pls_golite062009
pyrophosphatase activity	0.0047964784091391	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..546]	PSI-BLAST	111.0	FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM

Protein Overview: 4CLL5_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: