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Protein Overview: gi|18391078, gi|...

General Information:
Name(s) found: gi|18391078 [NCBI NR]
gi|111074448 [NCBI NR]
gi|110741821 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|18391078|ref|NP_563855.1| XBCP3 (xylem bark cysteine peptidase 3); cysteine-type endopeptidase/ cysteine-type peptidase [Arabidopsis thaliana] [NCBI NR]
  • gi|111074448|gb|ABH04597.1| At1g09850 [Arabidopsis thaliana] [NCBI NR]
  • gi|110741821|dbj|BAE98853.1| papain-like cysteine peptidase XBCP3 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 437 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: proteolysis [IEA]
    Molecular Function: cysteine-type endopeptidase activity [IEA]
    cysteine-type peptidase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH  60
   61 DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA PSVIMASKGQ SLGGSVKVPD 120
  121 SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG 180
  181 CNGGLMDYAF EFVIKNHGID TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL 240
  241 MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW 300
  301 GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE 360
  361 TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC DTTRSLCLKK TGNFTAIKPF 420
  421 WKKNSSKQLG RFEEWVM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] FFAS03 3.3 Caricain (protease omega)
    2 View Details [105..335] PSI-BLAST 67.69897 The 2.0 A crystal structure of the KDEL-tailed cysteine endopeptidase functioning in programmed cell death of Ricinus communis endosperm
    3 View Details [336..437] MSA 9.104996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peptidase activity
    		•  4.90619850296986 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.64381885397949 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.75054525912786 bayes_pls_golite062009
  • hydrolase activity
    		•  3.74079711298952 bayes_pls_golite062009
  • cysteine-type peptidase activity
    		•  2.71117522993364 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • binding
    		•  1.29265216891074 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.12653729823589 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • protein binding
    		•  0.774177093888744 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  0.649171767629235 bayes_pls_golite062009
  • thiolester hydrolase activity
    		•  0.59115205419466 bayes_pls_golite062009
  • kininogen binding
    		•  0.41283715939055 bayes_pls_golite062009
  • signal transducer activity
    		•  0.12644030784065 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.12644030784065 bayes_pls_golite062009
  • structural molecule activity
    		•  0.102555314244558 bayes_pls_golite062009
  • tubulin binding
    		•  0.0482209771629902 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  0.0101379718864654 bayes_pls_golite062009
  • microtubule binding
    		•  0.00635493133568055 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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