| Protein: | gi|18391078, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 437 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18391078, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
444.0 | [0..22] | [427..39] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH 60
61 DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA PSVI
|
| Detection Method: |  |
| Confidence: | 3.3 |
| Match: | 1pciA |
| Description: | Caricain (protease omega) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [105-335] |
1 11 21 31 41 51
| | | | | |
1 MASKGQSLGG SVKVPDSVDW RKKGAVTNVK DQGSCGACWS FSATGAMEGI NQIVTGDLIS 60
61 LSEQELIDCD KSYNAGCNGG LMDYAFEFVI KNHGIDTEKD YPYQERDGTC KKDKLKQKVV 120
121 TIDSYAGVKS NDEKALMEAV AAQPVSVGIC GSERAFQLYS SGIFSGPCST SLDHAVLIVG 180
181 YGSQNGVDYW IVKNSWGKSW GMDGFMHMQR NTENSDGVCG INMLASYPIK T
|
| Detection Method: | |
| Confidence: | 67.69897 |
| Match: | 1s4vA |
| Description: | The 2.0 A crystal structure of the KDEL-tailed cysteine endopeptidase functioning in programmed cell death of Ricinus communis endosperm |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.90619850296986 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.64381885397949 | bayes_pls_golite062009 |
| endopeptidase activity | 3.75054525912786 | bayes_pls_golite062009 |
| hydrolase activity | 3.74079711298952 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 2.71117522993364 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| binding | 1.29265216891074 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.12653729823589 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 0.774177093888744 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.649171767629235 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 0.59115205419466 | bayes_pls_golite062009 |
| kininogen binding | 0.41283715939055 | bayes_pls_golite062009 |
| signal transducer activity | 0.12644030784065 | bayes_pls_golite062009 |
| molecular transducer activity | 0.12644030784065 | bayes_pls_golite062009 |
| structural molecule activity | 0.102555314244558 | bayes_pls_golite062009 |
| tubulin binding | 0.0482209771629902 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.0101379718864654 | bayes_pls_golite062009 |
| microtubule binding | 0.00635493133568055 | bayes_pls_golite062009 |
|
Region A: Residues: [336-437] |
1 11 21 31 41 51
| | | | | |
1 HPNPPPPSPP GPTKCNLFTY CSSGETCCCA RELFGLCFSW KCCEIESAVC CKDGRHCCPH 60
61 DYPVCDTTRS LCLKKTGNFT AIKPFWKKNS SKQLGRFEEW VM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
