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Protein Overview: CLSY2_ARATH

General Information:
Name(s) found: CLSY2_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • SNF2 domain-containing protein CLASSY 2 OS=Arabidopsis thaliana GN=CLSY2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1261 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA][ISS]
    DNA binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR  60
   61 LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR IVSIERKPHE SECSCKINVR 120
  121 IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS 180
  181 LGKFLPDLSW LTVTSTLKSI VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS 240
  241 KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG 300
  301 WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK 360
  361 GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF GLNANSFGGG GSFSRSQYFD 420
  421 ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR 480
  481 VYKKVTLSAG AYNKLIDTYM NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL 540
  541 SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC 600
  601 CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML 660
  661 AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP SLMDPTSGNI GGCVISHSPG 720
  721 AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF 780
  781 KQNKTVQFNG VPKPSRDVMH VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY 840
  841 MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL 900
  901 ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM 960
  961 LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH KILTKLQDVI KTYFGYPLEV1020
 1021 ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK1080
 1081 ILIFCHNIAP IRMFTELFEN IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL1140
 1141 ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED1200
 1201 KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST1260
 1261 G

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] deduced N/A No confident structure predictions are available.
    2 View Details [208..394] MSA 2.360996 View MSA. No confident structure predictions are available.
    3 View Details [395..576] deduced N/A No confident structure predictions are available.
    4 View Details [577..1261] PSI-BLAST 75.0 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  1.69240737024755 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.65296291878002 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.64318297340116 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.64169398852165 bayes_pls_golite062009
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • binding
    		•  1.30574971150356 bayes_pls_golite062009
  • ATPase activity
    		•  1.20060977637766 bayes_pls_golite062009
  • transporter activity
    		•  1.14815595550467 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  1.08141765801535 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.01232806016411 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.92246823619313 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.89546790004613 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.89065853471483 bayes_pls_golite062009
  • hydrolase activity
    		•  0.875592967682638 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.8668136831732 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.86536264587818 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.86511385357843 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.495953203188599 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.3056113353665 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.30512981340046 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.30259037403175 bayes_pls_golite062009
  • nucleotide binding
    		•  0.28998663538132 bayes_pls_golite062009
  • DNA binding
    		•  0.128213991729785 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.125640198783258 bayes_pls_golite062009
  • helicase activity
    		•  0.00674361801283974 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle