YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|42572335

General Information:
Name(s) found: gi|42572335 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|42572335|ref|NP_974263.1| mRNA capping enzyme family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 672 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATMDLNAS PQPEEDDEPY VRHLEDYSSR DERIESAVEI ARREREERKK RMRYDKPTHN  60
   61 SQPVFRDQYY QNRNTKAYDR YKIPQGWLDC PPSGNEIGFL VPSKVPLNES YNNHVPPGSR 120
  121 YSFKQVIHNQ RIAGRKLGLV IDLTNTTRYY STTDLKKEGI KHVKIACKGR DAVPDNVSVN 180
  181 AFVNEVNQFV LNLKHSKKYI LVHCTHGHNR TGFMIVHYLM RSGPMNVTQA LKIFSDARPP 240
  241 GIYKPDYIDA LYSFYHEIKP ESVICPSTPE WKRSTELDLN GEALPDDEDD DGGPAGPVQG 300
  301 FQEESHQVDV KMSNDDVLGD EIPPDQEEGY RQFFYRMLSL NIGGRGCSQF PGSHPVSLNR 360
  361 ENLQLLRQRY YYATWKADGT RYMMLLTTDG CYIVDRSFRF RRVQMRFPFR HPTEGISDKV 420
  421 HHFTLLDGEM IIDTLPDKQK QERRYLIYDM VAINGQSVVE RPFYERWKML EKEVIDPRNH 480
  481 EKARSHIYRY DLEPFRVRRK DFWLLSAVEK VLKGFIPSLS HEADGLIFQG WDDPYVPRTH 540
  541 EGLLKWKYPE MNSVDFLYEQ DESGRGMLSL FERGKKKHMD GNSVVFRDDS DPAEYSGKIV 600
  601 ECSWDQDEKV WVSMRVRVDK STPNDINTFR KVMRSIKDNI TEEVLLQEIR EIIRLPMYAD 660
  661 RIQMDSKAAR RR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..272] PSI-BLAST 30.522879 CRYSTAL STRUCTURE OF THE HUMAN RNA guanylyltransferase and 5'- phosphatase
    2 View Details [273..388] FFAS03 2.19 RNA guanylyltransferase (mRNA capping enzyme); RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain
    3 View Details [389..672] PSI-BLAST 24.154902 mRNA capping enzyme alpha subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • mRNA guanylyltransferase activity
    		•  8.90512192081791 bayes_pls_golite062009
  • RNA guanylyltransferase activity
    		•  8.46124967325993 bayes_pls_golite062009
  • guanylyltransferase activity
    		•  5.45528434251369 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  3.08627215479695 bayes_pls_golite062009
  • ligase activity, forming phosphoric ester bonds
    		•  2.90848936326491 bayes_pls_golite062009
  • DNA ligase activity
    		•  2.88630907730339 bayes_pls_golite062009
  • ligase activity
    		•  2.7348192562888 bayes_pls_golite062009
  • RNA binding
    		•  2.41160981373213 bayes_pls_golite062009
  • hydrolase activity
    		•  2.27001407788735 bayes_pls_golite062009
  • catalytic activity
    		•  2.15370807854636 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.81524862921454 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.6315894906264 bayes_pls_golite062009
  • binding
    		•  1.63149986094272 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.62996999055328 bayes_pls_golite062009
    		• 1.5765009871268 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.39097817404242 bayes_pls_golite062009
  • DNA binding
    		•  1.33524321669723 bayes_pls_golite062009
  • structural molecule activity
    		•  1.32534541097134 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.19236946227657 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.15212468568198 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.10445667068538 bayes_pls_golite062009
  • DNA ligase (ATP) activity
    		•  1.02324195596817 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.996884322431837 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.83268201349295 bayes_pls_golite062009
  • translation regulator activity
    		•  0.613904794456162 bayes_pls_golite062009
  • nuclease activity
    		•  0.57381531077345 bayes_pls_golite062009
  • DNA ligase (NAD+) activity
    		•  0.571203360462711 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.566068090112017 bayes_pls_golite062009
  • RNA polymerase activity
    		•  0.477127926059749 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  0.477127926059749 bayes_pls_golite062009
  • mRNA binding
    		•  0.4162128308402 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.32084431704638 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.30211828233765 bayes_pls_golite062009
  • transcription factor activity
    		•  0.298729064067577 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.287720615514972 bayes_pls_golite062009
  • protein binding
    		•  0.229784545879049 bayes_pls_golite062009
  • ATP binding
    		•  0.17947590671995 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.148991737494582 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.138964074823321 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle