YRC Public Data Repository - Protein Structure Prediction

Protein:	PSTC_ECOLI
Organism:	Escherichia coli
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSTC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|69287966, gi\|... - gi\|69287966\|ref\|ZP_00618123.1\| Binding-protein-dependent transport systems inner membrane component ...	197.0	[0..3]	[318..718]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	184.0	[0..55]	[309..193]
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	183.0	[0..36]	[314..536]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	176.0	[0..54]	[311..183]
gi\|42522758, gi\|... - gi\|42522758\|ref\|NP_968138.1\| maltose/maltodextrin transport permease homologue [Bdellovibrio bacteri...	172.0	[0..13]	[315..444]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	170.0	[0..55]	[309..195]
gi\|86285148, gi\|... - gi\|86361046\|ref\|YP_472933.1\| sugar ABC transporter, permease protein [Rhizobium etli CFN 42], gi\|862...	168.0	[0..7]	[310..66]
gi\|106890679, gi... - gi\|106890679\|ref\|ZP_01357872.1\| Binding-protein-dependent transport systems inner membrane component...	165.0	[0..3]	[307..61]
gi\|29344205, gi\|... - gi\|29376740\|ref\|NP_815894.1\| ABC transporter, permease protein [Enterococcus faecalis V583], gi\|2934... gi\|238828806, gi... - gi\|238858579\|ref\|ZP_04648792.1\| ABC transporter, permease protein [Enterococcus faecalis TUSoD Ef11]...	165.0	[0..2]	[314..4]
gi\|8744950, gi\|2... - gi\|8744950\|emb\|CAB95276.1\| putative sugar transport integral membrane protein [Streptomyces coelicol...	163.0	[0..3]	[310..22]

Back

Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATKPAFNP PGKKGDIIFS VLVKLAALIV LLMLGGIIVS LIISSWPSIQ KFGLAFLWTK  60
   61 EWDAPNDIYG ALVPIYGTLV TSFIALLIAV PVSFGIALFL TELAPGWLKR PLGIAIELLA 120
  121 AIPSIVYGMW GLFIFAPLFA VYFQEPVGNI MSNIPIVGAL FSGPAFGIGI LAAGVILAIM 180
  181 IIPYIAAVMR DVFEQTPVMM KESAYGIGCT TWEVIWRIVL PFTKNGVIGG IMLGLGRALG 240
  241 ETMAVTFIIG NTYQLDSASL YMPGNSITSA LANEFAEAES GLHVAALMEL GLILFVITFI 300
  301 VLAASKFMIM RLAKNEGAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.90877533326679	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.28172962705395	bayes_pls_golite062009
anion transmembrane transporter activity	3.22955827660391	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.14931335059246	bayes_pls_golite062009
ion transmembrane transporter activity	3.04751896510563	bayes_pls_golite062009
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.00943245171704	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.88742737939609	bayes_pls_golite062009
cation transmembrane transporter activity	1.84323586388655	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.86861612741394	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.19552843550095	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.19552843550095	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: