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View Structure Prediction Details

Protein: gi|15810361, gi|...
Organism: Arabidopsis thaliana
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15810361, gi|....

Description E-value Query
Range		 Subject
Range
gi|109123108 - gi|109123108|ref|XP_001088055.1| PREDICTED: similar to solute carrier family 25 (mitochondrial carri...
 367.0 [0..2] [477..51]

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Predicted Domain #1
Region A:
Residues: [1-97] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEKSKQNP GKKPVEATME HVLVALRETK EKREIRIQKL FEFFDNSKLG FLDDTQIEKG  60
   61 LSSLSIPPKY RYASDFLKVC DSNRDGRVDY QEFRRYM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.522879
Match: 1ahrA
Description: CALMODULIN MUTANT WITH A TWO RESIDUE DELETION IN THE CENTRAL HELIX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 3.17556402087346 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.61874575467092 bayes_pls_golite062009
cytoskeletal protein binding 2.59226289545114 bayes_pls_golite062009
ion transmembrane transporter activity 2.57032504567157 bayes_pls_golite062009
cation transmembrane transporter activity 2.55650624542181 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.37465721152046 bayes_pls_golite062009
structural molecule activity 2.02132683356917 bayes_pls_golite062009
potassium channel activity 1.89948827776974 bayes_pls_golite062009
transcription regulator activity 1.82714164083189 bayes_pls_golite062009
motor activity 1.81368053536929 bayes_pls_golite062009
voltage-gated potassium channel activity 1.81135503818602 bayes_pls_golite062009
structural constituent of muscle 1.6840107470242 bayes_pls_golite062009
actin binding 1.50831300191117 bayes_pls_golite062009
cation channel activity 1.49312394054212 bayes_pls_golite062009
nucleic acid binding 1.43263098461462 bayes_pls_golite062009
calcium ion binding 1.40919295397643 bayes_pls_golite062009
DNA binding 1.40714762620388 bayes_pls_golite062009
molecular transducer activity 1.38521870126745 bayes_pls_golite062009
signal transducer activity 1.38521870126745 bayes_pls_golite062009
ion binding 1.36376383271837 bayes_pls_golite062009
metal ion binding 1.34827363853601 bayes_pls_golite062009
cation binding 1.34827363853601 bayes_pls_golite062009
protein binding 1.16246005294206 bayes_pls_golite062009
transporter activity 1.15928534291452 bayes_pls_golite062009
microfilament motor activity 1.0725773039399 bayes_pls_golite062009
channel activity 1.05847414989139 bayes_pls_golite062009
passive transmembrane transporter activity 1.05847414989139 bayes_pls_golite062009
ion channel activity 1.0369591011376 bayes_pls_golite062009
substrate-specific channel activity 1.03529144716694 bayes_pls_golite062009
voltage-gated cation channel activity 0.986621437232479 bayes_pls_golite062009
transmembrane transporter activity 0.945691505472547 bayes_pls_golite062009
voltage-gated ion channel activity 0.910148857310729 bayes_pls_golite062009
voltage-gated channel activity 0.896351900356978 bayes_pls_golite062009
gated channel activity 0.855502499003241 bayes_pls_golite062009
tubulin binding 0.851404549871251 bayes_pls_golite062009
actin-dependent ATPase activity 0.83859958498483 bayes_pls_golite062009
amine transmembrane transporter activity 0.717054504236607 bayes_pls_golite062009
substrate-specific transporter activity 0.693724160233023 bayes_pls_golite062009
microtubule binding 0.482216984478791 bayes_pls_golite062009
kinase activity 0.441286902559639 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.441121492437569 bayes_pls_golite062009
myosin binding 0.41761909113528 bayes_pls_golite062009
0.34446792626966 bayes_pls_golite062009
channel regulator activity 0.32809521759917 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.314221577186574 bayes_pls_golite062009
protein complex binding 0.278602833762221 bayes_pls_golite062009
active transmembrane transporter activity 0.246383459363256 bayes_pls_golite062009
myosin heavy chain binding 0.15875878144391 bayes_pls_golite062009
G-protein beta/gamma-subunit binding 0.13723868253862 bayes_pls_golite062009
actin filament binding 0.0239092123185181 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [98-193] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKELELYKI FQAIDIEHNG DICPAELWEA LDKAGIKIKD EELASFMEHV DKDNNGIITF  60
   61 EEWRDFLLLN PHEATIENIY HHWERVCLID IGEQAV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.6
Match: 1lkjA
Description: Calmodulin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 3.05873877511752 bayes_pls_golite062009
metal ion transmembrane transporter activity 2.62465453278501 bayes_pls_golite062009
ion transmembrane transporter activity 2.58331384033974 bayes_pls_golite062009
cation transmembrane transporter activity 2.56450760908401 bayes_pls_golite062009
cytoskeletal protein binding 2.46558208549358 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.39219065596758 bayes_pls_golite062009
structural molecule activity 1.98487959981447 bayes_pls_golite062009
potassium channel activity 1.89216151100151 bayes_pls_golite062009
transcription regulator activity 1.84460540487811 bayes_pls_golite062009
voltage-gated potassium channel activity 1.80063823023387 bayes_pls_golite062009
motor activity 1.68044193245645 bayes_pls_golite062009
cation channel activity 1.4950665324992 bayes_pls_golite062009
nucleic acid binding 1.47235952681162 bayes_pls_golite062009
DNA binding 1.43776232616174 bayes_pls_golite062009
actin binding 1.42596573582079 bayes_pls_golite062009
molecular transducer activity 1.39455566984566 bayes_pls_golite062009
signal transducer activity 1.39455566984566 bayes_pls_golite062009
structural constituent of muscle 1.38543362753268 bayes_pls_golite062009
transporter activity 1.18173318787461 bayes_pls_golite062009
protein binding 1.09433047543741 bayes_pls_golite062009
channel activity 1.06257290148275 bayes_pls_golite062009
passive transmembrane transporter activity 1.06257290148275 bayes_pls_golite062009
ion channel activity 1.04002358216664 bayes_pls_golite062009
ion binding 1.03987367434642 bayes_pls_golite062009
substrate-specific channel activity 1.03912277255945 bayes_pls_golite062009
metal ion binding 1.02345340724535 bayes_pls_golite062009
cation binding 1.02345340724535 bayes_pls_golite062009
voltage-gated cation channel activity 0.978447945241838 bayes_pls_golite062009
transmembrane transporter activity 0.967232199555998 bayes_pls_golite062009
calcium ion binding 0.96333115642547 bayes_pls_golite062009
voltage-gated ion channel activity 0.903772926548548 bayes_pls_golite062009
microfilament motor activity 0.896570410571443 bayes_pls_golite062009
voltage-gated channel activity 0.890153400390069 bayes_pls_golite062009
gated channel activity 0.857277240351281 bayes_pls_golite062009
tubulin binding 0.812194607648073 bayes_pls_golite062009
amine transmembrane transporter activity 0.718077220370247 bayes_pls_golite062009
substrate-specific transporter activity 0.713088884599039 bayes_pls_golite062009
actin-dependent ATPase activity 0.633699364706973 bayes_pls_golite062009
kinase activity 0.469615995845179 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.466822909047339 bayes_pls_golite062009
microtubule binding 0.459835151828266 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.346077079684229 bayes_pls_golite062009
active transmembrane transporter activity 0.255162242356474 bayes_pls_golite062009
protein complex binding 0.229066577003238 bayes_pls_golite062009
0.184502455796377 bayes_pls_golite062009
myosin binding 0.180486266101886 bayes_pls_golite062009
channel regulator activity 0.165732133218208 bayes_pls_golite062009
transferase activity 0.0241351960434347 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.014511553141427 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [194-478] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPDGISAHAQ RSKLLLAGGI AGAVSRTATA PLDRLKVALQ VQRTNLGVVP TIKKIWREDK  60
   61 LLGFFRGNGL NVAKVAPESA IKFAAYEMLK PIIGGADGDI GTSGRLLAGG LAGAVAQTAI 120
  121 YPMDLVKTRL QTFVSEVGTP KLWKLTKDIW IQEGPRAFYR GLCPSLIGII PYAGIDLAAY 180
  181 ETLKDLSRAH FLHDTAEPGP LIQLGCGMTS GALGASCVYP LQVIRTRMQA DSSKTSMGQE 240
  241 FLKTLRGEGL KGFYRGIFPN FFKVIPSASI SYLVYEAMKK NLALD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.30103
Match: 1okcA
Description: structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle