YRC Public Data Repository - Protein Structure Prediction

Protein:	DNJ63_ARATH
Organism:	Arabidopsis thaliana
Length:	572 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNJ63_ARATH.

Description	E-value	Query Range	Subject Range
gi\|108707614 - gi\|108707614\|gb\|ABF95409.1\| DnaJ domain containing protein, expressed [Oryza sativa (japonica cultiv...	240.0	[0..2]	[550..5]
gi\|48824061 - ref\|ZP_00285490.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger domain [Enteroc... gi\|69248952, gi\|... - gi\|69248952\|ref\|ZP_00604825.1\| DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone Dna...	220.0	[0..23]	[394..2]
gi\|107103857 - gi\|107103857\|ref\|ZP_01367775.1\| hypothetical protein PaerPA_01004928 [Pseudomonas aeruginosa PACS2] DNAJ_PSEA8 - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaJ PE=3 SV=1 DNAJ_PSEAE - Chaperone protein dnaJ OS=Pseudomonas aeruginosa GN=dnaJ PE=3 SV=1 DNAJ_PSEAB - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaJ PE=3 SV=1 DNAJ_PSEAE - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222... gi\|194549490, gi... - gi\|84317360\|ref\|ZP_00965808.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|126197717, gi... - gi\|84323584\|ref\|ZP_00971653.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	218.0	[0..23]	[371..1]
gi\|55736204, gi\|... - gb\|AAV61736.1\| heat shock protein, chaperonin [Streptococcus thermophilus CNRZ1066], gb\|AAV59846.1\|... DNAJ_STRT1 - Chaperone protein DnaJ OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaJ PE=3 SV=1 DNAJ_STRT2 - Chaperone protein DnaJ OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaJ PE=3 ...	218.0	[0..23]	[396..1]
DJC10_PONAB - DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1 DJC10_PONPY - DnaJ homolog subfamily C member 10 precursor - Pongo pygmaeus (Orangutan)	218.0	[0..3]	[557..14]
DNAJ_BACCN - Chaperone protein DnaJ OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)...	217.0	[0..23]	[393..1]
gi\|30268341 - gi\|30268341\|emb\|CAD89982.1\| hypothetical protein [Homo sapiens]	217.0	[0..3]	[557..13]
gi\|124530383, gi... - gi\|124530383\|ref\|ZP_01701069.1\| chaperone protein DnaJ [Escherichia coli B], gi\|124499274\|gb\|EAY4676... gi\|110640228, gi... - gi\|110640228\|ref\|YP_667956.1\| chaperone protein DnaJ [Escherichia coli 536], gi\|110341820\|gb\|ABG6805...	217.0	[0..19]	[398..7]
gi\|117622308, gi... - gi\|117622308\|ref\|YP_851221.1\| chaperone protein DnaJ [Escherichia coli APEC O1], gi\|115511432\|gb\|ABI... gi\|226902067, gi... - gi\|237704155\|ref\|ZP_04534636.1\| chaperone with DnaK [Escherichia sp. 3_2_53FAA], gi\|226902067\|gb\|EEH...	217.0	[0..20]	[396..8]
gi\|114582036, gi... - gi\|114582038\|ref\|XP_001159905.1\| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 10 isoform 5 [...	217.0	[0..3]	[557..14]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRTRLAISV VLVSTLLLLN VKAKSVDPYK VLGVSKDAKQ REIQKAFHKQ SLKYHPDKNK  60
   61 DKGAQEKFAE INNAYEILSD EEKRKNYDLY GDEKGQPGFD S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	2cugA
Description:	Solution structure of the J domain of the pseudo DnaJ protein, mouse hypothetical mKIAA0962
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [102-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPGGNGGYS YSSSGGGFNF GGPGGWQNMG GGGGSKSFSF SFGGPSESSF GFGMDDIFSM  60
   61 FSGGSSKGKE QFGGFGSSSN AESKSKSSTV AAIKTINSQV Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.256	b.55.1	PH domain-like
View	Download	0.256	b.55.1	PH domain-like
View	Download	0.223	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #3

Region A:
Residues: [203-572]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKDVVDQGMT WLLLSYLPSQ RGSQYHESII EEVAESLQGA LKVGRLNCET ESSLCKQLGI  60
   61 VPRRAPRMFV YSYTSSGKAT LAEYTEELVA KKVKSFCQEH LPRFSKKIDL NTFDVSAVSS 120
  121 QKTPKVLLLS TKKDTPVIWR VLSGLYNGRF VFYNTEVHDT SDPKIQKLGV DKFPAIVGWL 180
  181 SNGEKQVLKT GITVKNLKSA VQELGKLLEG LEKKNKKVSS KSQAGQAPNE SSEKIPLLSR 240
  241 PNFDSICGEN TPVCIIGAFR SSNGKEKLQS IMSKVSQKSL SRRQASTTGS QDTVSYSLLD 300
  301 ATKQSAFLSS LDKSEFKTSS DKLLIAYKPR RGKFATFKGD MTIEEVEKFV AAVLNGDIQF 360
  361 TKTRQKPQIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2b5eA
Description:	Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits