| Protein: | RH9_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 610 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH9_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
381.0 | [0..4] | [606..51] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF 60
61 GVKVRD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [67-494] |
1 11 21 31 41 51
| | | | | |
1 FHVKSVPSEF RSSIVSSAGF AAQEYAPSYE NDGGIGDSES VGSSGGGDGL AIADLGISPE 60
61 IVKALKGRGI EKLFPIQKAV LEPAMEGRDM IGRARTGTGK TLAFGIPIID KIIKFNAKHG 120
121 RGKNPQCLVL APTRELARQV EKEFRESAPS LDTICLYGGT PIGQQMRELN YGIDVAVGTP 180
181 GRIIDLMKRG ALNLSEVQFV VLDEADQMLQ VGFAEDVEII LQKLPAKRQS MMFSATMPSW 240
241 IRSLTKKYLN NPLTIDLVGD SDQKLADGIT MYSIAADSYG RASIIGPLVK EHGKGGKCIV 300
301 FTQTKRDADR LAFGLAKSYK CEALHGDISQ AQRERTLAGF RDGNFSILVA TDVAARGLDV 360
361 PNVDLVIHYE LPNNTETFVH RTGRTGRAGK KGSAILIHGQ DQTRAVKMIE KEVGSRFNEL 420
421 PSIAVERG
|
| Detection Method: | |
| Confidence: | 84.0 |
| Match: | 2hyiC |
| Description: | No description for 2hyiC was found. |
| Term | Confidence | Notes |
| translation initiation factor activity | 7.79457008386475 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 4.98637553020315 | bayes_pls_golite062009 |
| translation regulator activity | 4.94658029227343 | bayes_pls_golite062009 |
| structural constituent of ribosome | 4.56509805974548 | bayes_pls_golite062009 |
| structural molecule activity | 3.58406348799895 | bayes_pls_golite062009 |
| motor activity | 2.79327761685782 | bayes_pls_golite062009 |
| 2.75349474762373 | bayes_pls_golite062009 | |
| microtubule motor activity | 2.74365461017633 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| RNA binding | 2.29590582680214 | bayes_pls_golite062009 |
| RNA cap binding | 2.17871969124431 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
| transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.54436515966471 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.51134988628578 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.40488517180956 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| tubulin binding | 0.979946830272106 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| transcription factor activity | 0.959949409533517 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| microtubule binding | 0.907162506177187 | bayes_pls_golite062009 |
| actin binding | 0.883285269827407 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| mRNA binding | 0.76699944561918 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| transcription repressor activity | 0.607045223341107 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.5886142102548 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.569910969126728 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.568840867400671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.568779924702229 | bayes_pls_golite062009 |
| nucleotide binding | 0.564275755355315 | bayes_pls_golite062009 |
| ATP binding | 0.1860481660648 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.152859582615242 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138615225841109 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| microfilament motor activity | 0.0313060889304495 | bayes_pls_golite062009 |
|
Region A: Residues: [495-610] |
1 11 21 31 41 51
| | | | | |
1 SASMFEGVGA RSGGSFGGGR SGGGGYGSYG SSSGRSGGGS YGGYGGSSGR SGGGGGSYGG 60
61 SGGSSSRYSG GSDRSSGFGS FGSGGSSGGF GSDRSSQSSG RSSFGGFGSN DGKRSY
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1d2mA |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
