| Protein: | set-6 |
| Organism: | Caenorhabditis elegans |
| Length: | 708 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for set-6.
| Description | E-value | Query Range |
Subject Range |
|
|
333.0 | [0..42] | [634..13] |
|
Region A: Residues: [1-243] |
1 11 21 31 41 51
| | | | | |
1 MERSRTGGSS TYSMSTANVP IITISDDDDE LTIWEEPRKS PISSNSYSDE RNHSLSSTSN 60
61 SSVERSIIIT ISDDESEATE RNQQEVVDRA ISNNLTEKRR RSVESFHRLH SKERKLEVKS 120
121 RKKSRTSSSS MEASTSCTFP ARQTKTKRHK RKTYSTISSF APHHSTICAE LRNVNPARIA 180
181 DFRHPSIFEY SDMSLNERRE HWKKEMKVIK KHNDIRLMHE EAVRFDDIIE LDPTLNGYYR 240
241 RFM
|
| Detection Method: |  |
| Confidence: | 13.69897 |
| Match: | 1kjzA |
| Description: | Initiation factor eIF2 gamma subunit, domain II; Initiation factor eIF2 gamma subunit; Initiation factor eIF2 gamma subunit, N-terminal (G) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.56210491977805 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.56210491977805 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.2935968641033 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.2935353851804 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.29138695385133 | bayes_pls_golite062009 |
| nucleotide binding | 1.28669586915546 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.23094623498843 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| histone methyltransferase activity | 1.06255786387629 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| ATP binding | 0.98146619596929 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.949788783884952 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.931486373329219 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| protein methyltransferase activity | 0.876296121718575 | bayes_pls_golite062009 |
| transcription repressor activity | 0.862685397469217 | bayes_pls_golite062009 |
| DNA helicase activity | 0.75415390146713 | bayes_pls_golite062009 |
| helicase activity | 0.6191010101321 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.41398614759796 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.353804743424317 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.268787661420613 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.208665086324262 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.176241137083092 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.146753696170734 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.133017653323467 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| kinase activity | 0.0980017568205789 | bayes_pls_golite062009 |
| protein kinase activity | 0.0364322017534667 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 0.00156323320804219 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 0.00156323320804219 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 0.00156323320804219 | bayes_pls_golite062009 |
|
Region A: Residues: [244-606] |
1 11 21 31 41 51
| | | | | |
1 GAEQSTRALF MAVRCLATFG RNFYEEPERD HGEEEIPEEL DRYFEKLIYV APRTRIRITD 60
61 DIHLSNDTHR IPVYTDAKGE TLKTVKIPNP LLYDHIINNM VDKVKEPLLY EAIKIAGSSE 120
121 NVIRCKCCSQ DPVVNCFDNK DCPCFIANQF LQSRNKTTDT NEKLKFHTFQ PLMYNDGNPT 180
181 YYNTVGFACS PKCACKGACT NNATYLIQKK LYSIEIYRAD PQIGFGIRST LFIPAGTPII 240
241 EYCGELVDGE RLHSSLENYS YQLTDCEGDK HLYNLLREKY KNNPEYYDVL DELSKHHFHL 300
301 DAKMQGSVGR FANHSCTPNM EPLRLFKEGF TPANMRMIFF TLKDIFPGEP LTLDYGSEYK 360
361 VFR
|
| Detection Method: | |
| Confidence: | 51.045757 |
| Match: | 2igqA |
| Description: | No description for 2igqA was found. |
|
Region A: Residues: [607-708] |
1 11 21 31 41 51
| | | | | |
1 RQRCLCRTFA CRSGPHYEKF SNLDGKLIAS CFVRLHHASR IRYSVDLQLI ERFYSVGKVE 60
61 EVRVDPCVSF SKYNLKWRRQ LSTATCERLE NVIEIELSDE DS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
