| Protein: | lin-23 |
| Organism: | Caenorhabditis elegans |
| Length: | 665 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-23.
| Description | E-value | Query Range |
Subject Range |
|
|
648.0 | [0..3] | [661..798] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MSSPHRASTT QQLADLSLTE GEHDEGKPLS IDYLQGHEGL IEEVLKWSEH EQLDFMDKIV 60
61 HRLSHYQLGK VDNFIRPMLQ RDFISNLPAH LVELILFNVN SDSLKSCEEV STSWRCALAR 120
121 GQHWKKL
|
| Detection Method: |  |
| Confidence: | 5.522879 |
| Match: | 1n6dA |
| Description: | Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 1.29702012649067 | bayes_pls_golite062009 |
| peptidase activity | 0.990550688241572 | bayes_pls_golite062009 |
| catalytic activity | 0.60409960326459 | bayes_pls_golite062009 |
|
Region A: Residues: [128-665] |
1 11 21 31 41 51
| | | | | |
1 IEKNVRSDSL WWGLSEKRQW DKFLNISRDM SVRRICEKFN YDVNIKRDKL DQLILMHVFY 60
61 SKLYPKIIRD IHNIDNNWKR GNYKMTRINC QSENSKGVYC LQYDDDKIVS GLRDNTIKIW 120
121 DRKDYSCSRI LSGHTGSVLC LQYDNRVIIS GSSDATVRVW DVETGECIKT LIHHCEAVLH 180
181 LRFANGIMVT CSKDRSIAVW DMVSPRDITI RRVLVGHRAA VNVVDFDDRY IVSASGDRTI 240
241 KVWSMDTLEF VRTLAGHRRG IACLQYRGRL VVSGSSDNTI RLWDIHSGVC LRVLEGHEEL 300
301 VRCIRFDEKR IVSGAYDGKI KVWDLQAALD PRALSSEICL CSLVQHTGRV FRLQFDDFQI 360
361 VSSSHDDTIL IWDFLDAPPS GLPSSTNRAT LPELPNQAAV ARAQMLFEMA ARREIERRDR 420
421 EVVEEPALRP RANAARRHNA DIAAAAAAAE AARGAGDNDE SSSEEDLDRV DQVNNPNVAG 480
481 PAPPQPHNQN HRRRQPRPEL PVRLMQEMAA FDNMRRQQNN MDHLGGGDVD EEMPDGGP
|
| Detection Method: | |
| Confidence: | 52.522879 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 7.6976390971701 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 7.38724968585043 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 6.41826641115519 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 5.36089569430187 | bayes_pls_golite062009 |
| actin binding | 3.31804728298431 | bayes_pls_golite062009 |
| GTPase activity | 3.23750443966606 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| 2.92359149151424 | bayes_pls_golite062009 | |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| RNA binding | 2.1927334052131 | bayes_pls_golite062009 |
| dynactin binding | 1.92897254169098 | bayes_pls_golite062009 |
| ligase activity | 1.82531515493699 | bayes_pls_golite062009 |
| nucleic acid binding | 1.63776917287392 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 1.63631972867316 | bayes_pls_golite062009 |
| transcription regulator activity | 1.56901113625383 | bayes_pls_golite062009 |
| actin filament binding | 1.5197243426595 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| DNA binding | 1.0776875611211 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| transcription repressor activity | 0.826090766828089 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| snoRNA binding | 0.637990433340251 | bayes_pls_golite062009 |
| transcription factor activity | 0.541665384827041 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.426429095658617 | bayes_pls_golite062009 |
| kinase activity | 0.387572734234845 | bayes_pls_golite062009 |
| receptor binding | 0.316169754698691 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.259860754265901 | bayes_pls_golite062009 |
| structural molecule activity | 0.254012051644049 | bayes_pls_golite062009 |
| transcription factor binding | 0.244641056034795 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226335610368636 | bayes_pls_golite062009 |
| hydrolase activity | 0.181211933860468 | bayes_pls_golite062009 |
| histone binding | 0.166694897714113 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.0160791658499004 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
