| Protein: | csn-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 601 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn-1.
| Description | E-value | Query Range |
Subject Range |
|
|
301.0 | [0..1] | [601..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MQNELLDDPM DTGAPAAEAA AADEPLPPAH GIDREVTPKP AGNPDLMQQS LDNPAIPMHL 60
61 IEKRDDRRES CDDGYSLTVN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [81-184] |
1 11 21 31 41 51
| | | | | |
1 ESAIDIESLA CSYDSNAFFL RARFIARHCP ILRADAYISL INYLKEHTTD ITHYVAFFNE 60
61 LESELARKEF KNRQLNFQIP LRDQKWIEEN GATWQSTTDQ LQAE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-353] |
1 11 21 31 41 51
| | | | | |
1 YKRHKDEGVK ESTRRAMEDL FQHYMMAGKI DEAIRLYSRG IRDYCTQLKH SINMWINWME 60
61 VAICANDWGK LDTVTNTAYR SLKDADDAEK NSQQSQQAPP QRGENAPYMV ERDPNAPIQT 120
121 LTNRQLIETA LAKCLAAQVL LKLRNKRYSQ VVETILQIKT ECLQSKWFV
|
| Detection Method: | |
| Confidence: | 4.154902 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [354-446] |
1 11 21 31 41 51
| | | | | |
1 TSSDLGIYGM LSAMATMSRA DLKLQVSGNG TFRKLLESEP QLIELLGSYT SSRFGRCFEI 60
61 MRSVKPRLLL DPFISRNVDE LFEKIRQKCV LQY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [447-538] |
1 11 21 31 41 51
| | | | | |
1 LQPYSTIKMA TMAEAVGMSS AELQLSLLEL IEQKHVSLKI DQNEGIVRIL DERDENAILK 60
61 RVNVTCDRAT QKAKSLLWKT TLAGANIHSI SD
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.29569167054278 | bayes_pls_golite062009 |
| DNA binding | 4.90756541371868 | bayes_pls_golite062009 |
| nucleic acid binding | 4.69183445184264 | bayes_pls_golite062009 |
| transcription factor activity | 4.14166958134441 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.48053910222825 | bayes_pls_golite062009 |
| transcription activator activity | 2.29614125067822 | bayes_pls_golite062009 |
| transcription repressor activity | 2.19033875364989 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.48055533524841 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.33374581364046 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.27763700765562 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.12147035668008 | bayes_pls_golite062009 |
| transcription factor binding | 0.83705247708153 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.754042916649094 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.657984195080457 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.486434906547244 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.286130392009263 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| transferase activity | 0.064832527337659 | bayes_pls_golite062009 |
|
Region A: Residues: [539-601] |
1 11 21 31 41 51
| | | | | |
1 KETRPKRKNQ KESAKFDRNF GGIDVDEDPR GIAGPSGLSD DFNIAYDQQP QQQVQYLEDL 60
61 GDI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
