| Protein: | tax-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 800 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tax-2.
| Description | E-value | Query Range |
Subject Range |
|
|
415.0 | [0..1] | [800..1] |
|
Region A: Residues: [1-484] |
1 11 21 31 41 51
| | | | | |
1 MYQVPKRAKT NLAREIRKRE FSYVDRQKAS KPTQLSEKEW KSPRSEDSFD LLDPANASKE 60
61 PSASTRPLPY PPTRPPEVVI QIDEVESPIL GLIDETDDHE LDGRLDPASS FDANSLSATR 120
121 ASSIIEDDVR SQISFIMRER LHSIAKEVHR RTSAVREDLI RETPEDTVSM ASNVPKQNEH 180
181 RPSLMSLIGL QNRSESPTVD TVKNCFGFSL KGTFHPYGRF YMTWLSLVTL CFLFNAFCIP 240
241 LRSSYPYQTA DNWMYWFIVD YSCDLVYVID MLLIKPRLRF TRGGIQVKIY KDTQRHYLMT 300
301 RTFKLDILSI LPTDLMYFFF GKMPIWRINR VLKINSFWLL FDMLDNSFAN PYAIRIARTL 360
361 SYMIYIIHCN SCVYYKLSAL QAFGQIAYLE NGKWYLNKWV YNNQGNAYIR CFYFTAAVAT 420
421 STGNNPAPTN VIEYIYMTCS WMMGVFVFAL LLGQIRDIVS NANRNREEFQ RKMDLALGEC 480
481 KKLG
|
| Detection Method: |  |
| Confidence: | 25.522879 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [485-674] |
1 11 21 31 41 51
| | | | | |
1 LKMETTNRVR DWFIYTWQQQ KTLDEKKLIE KLPLKLQTDL ALSVHYTTLS KVQLFQDCDR 60
61 ALLRDLVLKL RPVIFLPGDM ICLKGDVGKE MYIINQGILQ VVGGDHNEKI FAELAQGAVF 120
121 GEISLLAIGG NNRRTASIRA KGYCTLFVLA KEDLNDVIRY YPQAQTILRR KAAAMLKNDK 180
181 KSDEKTEKIK
|
| Detection Method: | |
| Confidence: | 23.39794 |
| Match: | 1q3eA |
| Description: | HCN2J 443-645 in the presence of cGMP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclic nucleotide-gated ion channel activity | 10.1422916734545 | bayes_pls_golite062009 |
| intracellular cyclic nucleotide activated cation channel activity | 10.1422916734545 | bayes_pls_golite062009 |
| intracellular ligand-gated ion channel activity | 9.72053268940283 | bayes_pls_golite062009 |
| intracellular cGMP activated cation channel activity | 9.19973076787954 | bayes_pls_golite062009 |
| ion channel activity | 8.54258173089828 | bayes_pls_golite062009 |
| gated channel activity | 8.40583491856766 | bayes_pls_golite062009 |
| channel activity | 8.39905773163311 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 8.39905773163311 | bayes_pls_golite062009 |
| substrate-specific channel activity | 8.39470084162975 | bayes_pls_golite062009 |
| cation channel activity | 8.37340171056317 | bayes_pls_golite062009 |
| cGMP binding | 7.7575871125398 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 7.41584542512987 | bayes_pls_golite062009 |
| ligand-gated channel activity | 7.41584542512987 | bayes_pls_golite062009 |
| cyclic nucleotide binding | 7.37322432929433 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 7.27305202954784 | bayes_pls_golite062009 |
| GMP binding | 5.49455172024846 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 4.92543918512794 | bayes_pls_golite062009 |
| voltage-gated channel activity | 4.90247452112447 | bayes_pls_golite062009 |
| intracellular cAMP activated cation channel activity | 3.95109938608832 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 3.17407714154852 | bayes_pls_golite062009 |
| potassium channel activity | 3.16645830461177 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.45301353888223 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 2.42821009576643 | bayes_pls_golite062009 |
| protein binding | 1.86347494944834 | bayes_pls_golite062009 |
| binding | 1.59096092728475 | bayes_pls_golite062009 |
| transcription regulator activity | 1.52941414851886 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33862527414723 | bayes_pls_golite062009 |
| DNA binding | 1.17942022803543 | bayes_pls_golite062009 |
| signal transducer activity | 0.900388370232708 | bayes_pls_golite062009 |
| molecular transducer activity | 0.900388370232708 | bayes_pls_golite062009 |
| transcription factor activity | 0.720377542376114 | bayes_pls_golite062009 |
| transcription activator activity | 0.659469524274627 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.477325600303481 | bayes_pls_golite062009 |
|
Region A: Residues: [675-800] |
1 11 21 31 41 51
| | | | | |
1 AQAELEDRCK INPRQVPKLI TLIANMTEMN ENKGVQELKK VIEEETEKSR RQSIYYPWST 60
61 LQRDDDDEEE WNDEEDLSDV GEDFDLDPTN HSDDEDPMED VDLAPEVHDD DWDQPGTSGT 120
121 QKLHAD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
