| Protein: | hcp-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 288 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hcp-3.
| Description | E-value | Query Range |
Subject Range |
|
|
281.0 | [0..1] | [288..1] |
|
|
251.0 | [0..3] | [288..5] |
|
|
220.0 | [0..155] | [287..44] |
|
|
217.0 | [0..151] | [287..12] |
|
|
217.0 | [0..146] | [287..611] |
|
|
215.0 | [0..148] | [287..199] |
|
|
211.0 | [0..156] | [287..1] |
|
|
211.0 | [0..156] | [287..17] |
|
Region A: Residues: [1-146] |
1 11 21 31 41 51
| | | | | |
1 MADDTPIIEE IAEQNESVTR IMQRLKHDMQ RVTSVPGFNT SAAGVNDLID ILNQYKKELE 60
61 DDAANDYTEA HIHKIRLVTG KRNQYVLKLK QAEDEYHARK EQARRRASSM DFTVGRNSTN 120
121 LVDYSHGRHH MPSYRRHDSS DEENYS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [147-288] |
1 11 21 31 41 51
| | | | | |
1 MDGTNGDGNR AGPSNPDRGN RTGPSSSDRV RMRAGRNRVT KTRRYRPGQK ALEEIRKYQK 60
61 TEDLLIQKAP FARLVREIMQ TSTPFGADCR IRSDAISALQ EAAEAFLVEM FEGSSLISTH 120
121 AKRVTLMTTD IQLYRRLCLR HL
|
| Detection Method: | |
| Confidence: | 52.0 |
| Match: | 1u35A |
| Description: | Crystal structure of the nucleosome core particle containing the histone domain of macroH2A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 4.57339366278729 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| centromeric DNA binding | 2.60445660474495 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38228606466152 | bayes_pls_golite062009 |
| transcription repressor activity | 2.3574713307436 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.30859203490073 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.725138319268162 | bayes_pls_golite062009 |
| histone binding | 0.218942897869955 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.0885263144317296 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
