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Protein Overview: cpar-1

General Information:
Name(s) found: cpar-1 / CE00188 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00010036 locus:cpar-1 Histone H3-like centromeric protein cpar-1 status:Partially_confirmed UniProt:P34440 protein_id:CAA80154.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    nucleosome [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    nucleosome assembly [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDGPIIEE IAEKNGRVAR IMQRLQHDTQ RVTSVPGFNT SATGYADLIA LLDQYKNDLE  60
   61 AVGFNDLEQA RRRAPSVDIT VGSNSTNLVD YSHGRHDMPS HRRHDSSDEE ITAANSHHQS 120
  121 PINVGNRNDT DGTNGRNGSR AGSSSSDRVR MIAGRNRISK TRRYRPGQKA LEEIRKYQES 180
  181 EDLLIPKAPF ARLVREIMQT STPFSSDLRI RSDAINALQE ASEALLVQMF DGSSLISAHS 240
  241 KRATLTTTDV QLYRRLCLPN L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..261] PSI-BLAST 56.39794 Crystal structure of the nucleosome core particle containing the histone domain of macroH2A

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  2.55554809461094 bayes_pls_golite062009
  • binding
    		•  1.73700145395396 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.69908144382455 bayes_pls_golite062009
  • DNA binding
    		•  1.04127970884713 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.86554830065808 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.57702121108343 bayes_pls_golite062009
  • protein binding
    		•  0.260428734715028 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  0.107780301417639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle