| Protein: | cpar-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 261 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpar-1.
| Description | E-value | Query Range |
Subject Range |
|
|
284.0 | [0..1] | [261..1] |
|
|
235.0 | [0..123] | [260..45] |
|
|
232.0 | [0..120] | [260..618] |
|
|
231.0 | [0..122] | [260..206] |
|
|
228.0 | [0..122] | [260..16] |
|
|
227.0 | [0..123] | [260..1] |
|
|
227.0 | [0..122] | [260..16] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MADDGPIIEE IAEKNGRVAR IMQRLQHDTQ RVTSVPGFNT SATGYADLIA LLDQYKNDLE 60
61 AVGFNDLEQA RRRAPSVDIT VGSNSTNLVD YSHGRH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-261] |
1 11 21 31 41 51
| | | | | |
1 DMPSHRRHDS SDEEITAANS HHQSPINVGN RNDTDGTNGR NGSRAGSSSS DRVRMIAGRN 60
61 RISKTRRYRP GQKALEEIRK YQESEDLLIP KAPFARLVRE IMQTSTPFSS DLRIRSDAIN 120
121 ALQEASEALL VQMFDGSSLI SAHSKRATLT TTDVQLYRRL CLPNL
|
| Detection Method: | |
| Confidence: | 56.39794 |
| Match: | 1u35A |
| Description: | Crystal structure of the nucleosome core particle containing the histone domain of macroH2A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 2.55554809461094 | bayes_pls_golite062009 |
| binding | 1.73700145395396 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.69908144382455 | bayes_pls_golite062009 |
| DNA binding | 1.04127970884713 | bayes_pls_golite062009 |
| nucleic acid binding | 0.86554830065808 | bayes_pls_golite062009 |
| transcription regulator activity | 0.57702121108343 | bayes_pls_golite062009 |
| protein binding | 0.260428734715028 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.107780301417639 | bayes_pls_golite062009 |
