| Protein: | eme1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 738 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eme1.
| Description | E-value | Query Range |
Subject Range |
|
|
484.0 | [0..38] | [735..26] |
|
|
479.0 | [0..38] | [735..50] |
|
|
456.0 | [0..88] | [720..66] |
|
|
454.0 | [0..52] | [735..23] |
|
|
454.0 | [0..115] | [714..3] |
|
|
371.0 | [0..210] | [725..18] |
|
|
369.0 | [0..92] | [734..6] |
|
|
367.0 | [0..210] | [725..18] |
|
|
356.0 | [0..49] | [735..2] |
|
|
351.0 | [0..176] | [735..601] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MTLQSTDSAI VIDSEADVDI SSSQASPSKV CRDNIALSEH NVITVLDTPQ RSTQCDSLLK 60
61 SFSTPLVSGS EDVLPSPRDA LNITNKKSVT DNLLLSLTSS NQSTNTNLNP SSRVEIINLN 120
121 SSPPNSLSSQ PKHQEFHLFH TPTIPRTTQL SSKTS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [156-372] |
1 11 21 31 41 51
| | | | | |
1 SPIVIPDDNE QVASPLSKKA ASLTSSPLKD FQSSPPLSTV LQKSHSLHDI LLDTNDDDHF 60
61 PFTQSPLTKT KSFNDALTSS SSILKPCMPS IASPTSNRLS HAPSTPNLFP NQDSSNTIDL 120
121 INNRSKTSVE NQERTFNLTS DVHLDSPTSP SKHSSIEPNT SQEDSFQELP SLNKLSIQSR 180
181 AFKKMRLPKI SRTTDTPPAS TSNSNKKNLD KLKKMRK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [373-439] |
1 11 21 31 41 51
| | | | | |
1 LCSRSLEPYE LDSNTQRKRK RYEDSLKKSK TLDKVDSLNR KMAKELDRKN SKELQKINKV 60
61 KRTKEEC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [440-738] |
1 11 21 31 41 51
| | | | | |
1 LSEIILLSPD DWASSWYSTV RSQLDSYNCQ FVVNSNQPKD SIMWKRKVNN VFNSSTNRFE 60
61 LSIEHEQIEP FALLRLKCRD FIKYIEEDQA DTFFHEMSEK FKGCKLILLL EGIPNYFKSL 120
121 KAELNRQYAA AVNSGTRPLL FGSLSKYQNF TKEKLESEIV RFSFEHSILI NTSNDEKETA 180
181 QWIVSFTGDI ALSRYKHFSK FSARASTTEI GHVKSADRIE NSLNFMLRQI LRVTPNIANA 240
241 ICDQFDSIPS LIHHLKTHGE ESLTNVVIQS SISERNLGPV LSRRIYNTFL CKEASSDAP
|
| Detection Method: | |
| Confidence: | 2.22 |
| Match: | 2bgwA |
| Description: | XPF from Aeropyrum pernix, complex with DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| four-way junction helicase activity | 9.97778352333441 | bayes_pls_golite062009 |
| DNA helicase activity | 7.39534793109438 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 3.3215200974849 | bayes_pls_golite062009 |
| single-stranded DNA specific endodeoxyribonuclease activity | 3.18118446093396 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 3.15144163151183 | bayes_pls_golite062009 |
| excinuclease ABC activity | 2.93145997831744 | bayes_pls_golite062009 |
| structure-specific DNA binding | 2.54099670773663 | bayes_pls_golite062009 |
| single-stranded DNA binding | 2.43123013915603 | bayes_pls_golite062009 |
| binding | 2.15665005558542 | bayes_pls_golite062009 |
| nucleic acid binding | 1.99056241947033 | bayes_pls_golite062009 |
| helicase activity | 1.95147423101621 | bayes_pls_golite062009 |
| damaged DNA binding | 1.93355995630071 | bayes_pls_golite062009 |
| DNA binding | 1.8937816608663 | bayes_pls_golite062009 |
| nuclease activity | 1.53464565125134 | bayes_pls_golite062009 |
| endonuclease activity | 1.2384221353329 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.868370062080145 | bayes_pls_golite062009 |
| catalytic activity | 0.776505703815067 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.757551245363434 | bayes_pls_golite062009 |
| protein binding | 0.687937183662529 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.593379763919056 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.591712648797139 | bayes_pls_golite062009 |
