| Protein: | bdp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 507 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bdp1.
| Description | E-value | Query Range |
Subject Range |
|
|
183.0 | [0..3] | [491..26] |
|
|
166.0 | [0..2] | [487..10] |
|
|
156.0 | [0..74] | [477..19] |
|
|
155.0 | [0..25] | [485..233] |
|
|
150.0 | [0..27] | [492..147] |
|
|
148.0 | [0..282] | [490..321] |
|
|
146.0 | [0..3] | [348..772] |
|
|
144.0 | [0..16] | [462..48] |
|
Region A: Residues: [1-190] |
1 11 21 31 41 51
| | | | | |
1 MSRFAPKFTA RREKVSDQKE VVHEEKNQPL TGNEVETSAQ LSRDTANADI SSPVVQTVVH 60
61 KEATENPTAS SYRKDDSVKQ NEKLLHSNPT FKISKPTVLE QPLNAIEHLS PETDLSSSAE 120
121 QQFMKELDLF FDENIPLSQL SAVSDGKADS PATKKSRRSY RESSLKRKSQ LILENVGTDE 180
181 KIINISETKM
|
| Detection Method: |  |
| Confidence: | 1.19 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [191-340] |
1 11 21 31 41 51
| | | | | |
1 SALCDDPGIG RKSQRFIELE KMLFEEKRAK RIKKQGASTA SSSREASLDS TIKQPLSASL 60
61 LESSEPKEKE EIVGSLEEEG TDESASLEDS LSHPTKSILD QLADKMEVDG LNNNSNYSAT 120
121 PRTRVVNGQI VLDETSLEVD RHERDFVPAE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [341-426] |
1 11 21 31 41 51
| | | | | |
1 EREYVEENSL SRRVTSATWG NRQKPEKWNA MDTEKFYKAL SQWGTDFALI ANMFPTRNRR 60
61 QIKLKFKQEE RRNPARVNQA LKIKKP
|
| Detection Method: | |
| Confidence: | 1.41 |
| Match: | 2crgA |
| Description: | Solution structure of the myb-like DNA-binding domain of mouse MTA3 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.86538715425734 | bayes_pls_golite062009 |
| DNA binding | 4.15693977839557 | bayes_pls_golite062009 |
| nucleic acid binding | 3.86924871531439 | bayes_pls_golite062009 |
| transcription factor activity | 3.58468334639092 | bayes_pls_golite062009 |
| binding | 3.44891379113214 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.06463428342397 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00875399167309 | bayes_pls_golite062009 |
| transcription repressor activity | 1.69615348178304 | bayes_pls_golite062009 |
| transcription activator activity | 1.5973137667873 | bayes_pls_golite062009 |
| transcription factor binding | 1.24678737091956 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.765443826551515 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.758137852714052 | bayes_pls_golite062009 |
| chromatin binding | 0.69830134407433 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.691780246385357 | bayes_pls_golite062009 |
| protein binding | 0.595453899490373 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.201150053959035 | bayes_pls_golite062009 |
|
Region A: Residues: [427-507] |
1 11 21 31 41 51
| | | | | |
1 IDMEEYSKVS GKVFRPVEEM EKELQKIREN FEEERRRAIE VAEQRQLIVN HELEQEKNAP 60
61 SPTDDKSYVF EDGVEVVGQV V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
