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Protein Overview: bdp1

General Information:
Name(s) found: bdp1 / SPCC1919.14c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • transcription factor TFIIIB complex subunit Bdp1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 507 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    transcription factor TFIIIB complex [ISSLink to PubMed article]
    Biological Process: transcription from RNA polymerase III promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFAPKFTA RREKVSDQKE VVHEEKNQPL TGNEVETSAQ LSRDTANADI SSPVVQTVVH  60
   61 KEATENPTAS SYRKDDSVKQ NEKLLHSNPT FKISKPTVLE QPLNAIEHLS PETDLSSSAE 120
  121 QQFMKELDLF FDENIPLSQL SAVSDGKADS PATKKSRRSY RESSLKRKSQ LILENVGTDE 180
  181 KIINISETKM SALCDDPGIG RKSQRFIELE KMLFEEKRAK RIKKQGASTA SSSREASLDS 240
  241 TIKQPLSASL LESSEPKEKE EIVGSLEEEG TDESASLEDS LSHPTKSILD QLADKMEVDG 300
  301 LNNNSNYSAT PRTRVVNGQI VLDETSLEVD RHERDFVPAE EREYVEENSL SRRVTSATWG 360
  361 NRQKPEKWNA MDTEKFYKAL SQWGTDFALI ANMFPTRNRR QIKLKFKQEE RRNPARVNQA 420
  421 LKIKKPIDME EYSKVSGKVF RPVEEMEKEL QKIRENFEEE RRRAIEVAEQ RQLIVNHELE 480
  481 QEKNAPSPTD DKSYVFEDGV EVVGQVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] FFAS03 1.19 THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
    2 View Details [191..340] MSA 1.198996 View MSA. No confident structure predictions are available.
    3 View Details [341..426] FFAS03 1.41 Solution structure of the myb-like DNA-binding domain of mouse MTA3 protein
    4 View Details [427..507] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  4.86538715425734 bayes_pls_golite062009
  • DNA binding
    		•  4.15693977839557 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.86924871531439 bayes_pls_golite062009
  • transcription factor activity
    		•  3.58468334639092 bayes_pls_golite062009
  • binding
    		•  3.44891379113214 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.06463428342397 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.00875399167309 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.69615348178304 bayes_pls_golite062009
  • transcription activator activity
    		•  1.5973137667873 bayes_pls_golite062009
  • transcription factor binding
    		•  1.24678737091956 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.765443826551515 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.758137852714052 bayes_pls_golite062009
  • chromatin binding
    		•  0.69830134407433 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.691780246385357 bayes_pls_golite062009
  • protein binding
    		•  0.595453899490373 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.201150053959035 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle