| Protein: | pub2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 671 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pub2.
| Description | E-value | Query Range |
Subject Range |
|
|
581.0 | [0..1] | [671..262] |
|
|
572.0 | [0..12] | [671..91] |
|
|
572.0 | [0..7] | [671..116] |
|
|
570.0 | [0..1] | [671..1] |
|
|
570.0 | [0..1] | [671..1] |
|
|
567.0 | [0..3] | [671..9] |
|
|
566.0 | [0..7] | [671..9] |
|
Region A: Residues: [1-205] |
1 11 21 31 41 51
| | | | | |
1 MENIRFEVQL TILHVEGLWK NGLLRSLKPY LLISVDDDQF IKTNVASGTL RLSWGFTQKL 60
61 TVSPQSIILL QLFDEKQKNE TSDGFVGLGA AVVNSFLPFN NPKDDYKTRI TLRSPSGSYR 120
121 GSVVCLFKRS KFLPEELPAD KSQICTDIID DASGCAWETR IDEFGHVYYL KSPQLSVISA 180
181 ISHEKLENLT PKQLKEVFSQ FLFNN
|
| Detection Method: |  |
| Confidence: | 22.69897 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [206-275] |
1 11 21 31 41 51
| | | | | |
1 QSKSSLKINL EYKVIKHLLE HYPLALSVRQ QVAVEKGPLP AGWEMRLSED YHVYFVDHST 60
61 KTTTWSDPRD
|
| Detection Method: | |
| Confidence: | 2.87 |
| Match: | 1o6wA |
| Description: | Splicing factor prp40 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| proline-rich region binding | 3.98603472468613 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 2.50663692075518 | bayes_pls_golite062009 |
| binding | 2.36222118356464 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.33627990300135 | bayes_pls_golite062009 |
| transcription factor binding | 1.73081671364316 | bayes_pls_golite062009 |
| histone methyltransferase activity | 1.67021314973391 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.64250861692227 | bayes_pls_golite062009 |
| protein binding | 1.27041711914941 | bayes_pls_golite062009 |
| transcription regulator activity | 1.23640210204205 | bayes_pls_golite062009 |
| protein methyltransferase activity | 0.9455445085372 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 0.863094487787088 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 0.863094487787088 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 0.863094487787088 | bayes_pls_golite062009 |
| transcription activator activity | 0.836627609051151 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.70472974102432 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.572760201007946 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.539489048525578 | bayes_pls_golite062009 |
| transferase activity | 0.385387347513497 | bayes_pls_golite062009 |
| catalytic activity | 0.231344568578849 | bayes_pls_golite062009 |
| transcription repressor activity | 0.179456065780754 | bayes_pls_golite062009 |
|
Region A: Residues: [276-671] |
1 11 21 31 41 51
| | | | | |
1 NVVASDSVSE NTDSIQQIND EYQRKIAYMY DRPEMAVNDA QLQLKVSRAT TFEDAYDIIS 60
61 KLSVSDMKKK LLIRFRNEDG LDYGGVSREF FYILSHAIFN PGYSLFEYAT DDNYGLQISP 120
121 LSSVNPDFRS YFRFVGRVMG LAIYHRRYLD VQFVLPFYKR ILQKPLCLED VKDVDEVYYE 180
181 SLKWIKNNDV DESLCLNFSV EENRFGESVT VDLIPNGRNI AVNNQNKMNY LKALTEHKLV 240
241 TSTEEQFNAL KGGLNELIPD SVLQIFNENE LDTLLNGKRD IDVQDWKRFT DYRSYTETDD 300
301 IVIWFWELLS EWSPEKKAKL LQFATGTSRL PLSGFKDMHG SDGPRKFTIE KVGHISQLPK 360
361 AHTCFNRLDI PPYNSKEELE QKLTIAIQET AGFGTE
|
| Detection Method: | |
| Confidence: | 135.0 |
| Match: | 1nd7A |
| Description: | Conformational Flexibility Underlies Ubiquitin Ligation Mediated by the WWP1 HECT domain E3 Ligase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 7.14616396317218 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 6.99796579811325 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 6.03005793772151 | bayes_pls_golite062009 |
| proline-rich region binding | 4.88459817006763 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 4.50502148129705 | bayes_pls_golite062009 |
| sodium channel inhibitor activity | 3.64966529121446 | bayes_pls_golite062009 |
| phosphothreonine binding | 2.95470890163581 | bayes_pls_golite062009 |
| phosphoserine binding | 2.95470890163581 | bayes_pls_golite062009 |
| binding | 2.32045312021486 | bayes_pls_golite062009 |
| ion channel inhibitor activity | 2.14402963004533 | bayes_pls_golite062009 |
| channel inhibitor activity | 2.14402963004533 | bayes_pls_golite062009 |
| ligase activity | 2.05648169328967 | bayes_pls_golite062009 |
| RNA polymerase binding | 1.8762146737407 | bayes_pls_golite062009 |
| protein binding | 1.29390544644063 | bayes_pls_golite062009 |
| sodium channel regulator activity | 1.19047973745862 | bayes_pls_golite062009 |
| catalytic activity | 1.15152367676155 | bayes_pls_golite062009 |
| ubiquitin-ubiquitin ligase activity | 0.598436219078807 | bayes_pls_golite062009 |
| transcription factor binding | 0.585725073778084 | bayes_pls_golite062009 |
| nucleic acid binding | 0.509776214744915 | bayes_pls_golite062009 |
| transcription regulator activity | 0.376852535152545 | bayes_pls_golite062009 |
| DNA binding | 0.187697131456126 | bayes_pls_golite062009 |
| channel regulator activity | 0.072778668515899 | bayes_pls_golite062009 |
| 0.051942165438844 | bayes_pls_golite062009 |
