| Protein: | rfp2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 205 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rfp2.
| Description | E-value | Query Range |
Subject Range |
|
|
132.0 | [0..54] | [201..164] |
|
|
132.0 | [0..54] | [201..164] |
|
|
132.0 | [0..54] | [201..164] |
|
|
132.0 | [0..54] | [201..164] |
|
|
131.0 | [0..54] | [201..164] |
|
|
131.0 | [0..54] | [201..160] |
|
|
131.0 | [0..54] | [201..164] |
|
|
131.0 | [0..54] | [201..164] |
|
|
131.0 | [0..54] | [201..164] |
|
|
131.0 | [0..54] | [201..164] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MNLHGLELPG RDQRLSPEVI DLTEDIEDDG ADVSEVTLLD LTRIPEFQPR RRIRTSRNHL 60
61 DANLSNVPTI NSIPSPVTRP PVA
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.391 | 0.373 | DNA repair | a.21.1 | HMG-box |
| View | Download | 0.330 | 0.179 | zinc ion binding | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.222 | 0.002 | protein ubiquitination | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.380 | N/A | N/A | a.21.1 | HMG-box |
| View | Download | 0.329 | N/A | N/A | a.21.1 | HMG-box |
|
Region A: Residues: [84-205] |
1 11 21 31 41 51
| | | | | |
1 VGGGIFYGAR RTRNRSQTQR RTLLENGFRN SRKKAQDSSN SIAERVSPPP GFCYDVHPHN 60
61 NIACAKCGNE LVSDEKKSIF AAKCGHLFCS TCAKELRKKT VPCPVQHCRK RITKKFIFPL 120
121 YL
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 10.0460587929138 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 9.83708325747487 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 8.99384576623969 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 7.6988425139962 | bayes_pls_golite062009 |
| ligase activity | 3.92677358871643 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 1.93290256907934 | bayes_pls_golite062009 |
| nucleic acid binding | 1.65245433674494 | bayes_pls_golite062009 |
| NEDD8 ligase activity | 1.64302727579554 | bayes_pls_golite062009 |
| protein binding | 1.5975811408548 | bayes_pls_golite062009 |
| transcription repressor activity | 1.40546445536977 | bayes_pls_golite062009 |
| DNA binding | 1.36987440722489 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| transcription factor binding | 0.87358980288412 | bayes_pls_golite062009 |
| transcription factor activity | 0.679771179415046 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
