| Protein: | rfp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 254 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rfp1.
| Description | E-value | Query Range |
Subject Range |
|
|
120.0 | [0..170] | [233..591] |
|
|
117.0 | [0..156] | [253..224] |
|
|
108.0 | [0..156] | [214..215] |
|
|
102.0 | [0..165] | [253..277] |
|
|
99.0 | [0..157] | [253..352] |
|
|
89.0 | [0..156] | [228..241] |
|
|
87.0 | [0..161] | [215..278] |
|
|
75.0 | [0..173] | [249..188] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MQFNGSNGID ESSVIDLTRS PSPPVETSIS STNIIDLDAI PDDSFPSSPV LSPRRRRMNR 60
61 RRNERSRNFP SNHLSYLEDM IYLGPQVSTR RSSSRRDLMG MIARTFPEFS SVNSLSPSLF 120
121 QLIVNRMRFD AIHPEWTNGS DDEYFSNHFE ESYDDFTSSL ENI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [164-254] |
1 11 21 31 41 51
| | | | | |
1 KQSYKPPGPP KSGFTRSFNN DTLMVCPRCQ EPLGTSKSKE KSALWATKCG HVYCGSCAKV 60
61 LKTSKRSQSK CLVNDCGRYL NTKNAMWELF Y
|
| Detection Method: | |
| Confidence: | 2.02 |
| Match: | 1jm7A |
| Description: | brca1 RING domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 9.85513873918659 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 9.6498820226444 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 8.65014213775678 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 7.41958646938187 | bayes_pls_golite062009 |
| ligase activity | 3.71574519150582 | bayes_pls_golite062009 |
| binding | 2.70912934275371 | bayes_pls_golite062009 |
| transcription regulator activity | 1.9010236336815 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64351954613384 | bayes_pls_golite062009 |
| protein binding | 1.48593945455888 | bayes_pls_golite062009 |
| DNA binding | 1.37350981563815 | bayes_pls_golite062009 |
| NEDD8 ligase activity | 1.35297260222963 | bayes_pls_golite062009 |
| transcription repressor activity | 1.33893730503955 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.02238152139385 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.821040441472875 | bayes_pls_golite062009 |
| transcription factor binding | 0.742650421609881 | bayes_pls_golite062009 |
| transcription factor activity | 0.68618471403445 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.356312424125648 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.0136579100966835 | bayes_pls_golite062009 |
