| Protein: | smc5 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1065 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smc5.
| Description | E-value | Query Range |
Subject Range |
|
|
257.0 | [0..3] | [1037..553] |
|
|
232.0 | [0..8] | [1061..160] |
|
|
226.0 | [0..4] | [860..205] |
|
|
222.0 | [0..8] | [1061..151] |
|
|
212.0 | [0..8] | [1061..67] |
|
Region A: Residues: [1-273] |
1 11 21 31 41 51
| | | | | |
1 MILTRESYAL GSIVRIKLVN FVTYDYCELF PGPYLNLIIG PNGTGKSTIV SAICIGLGWP 60
61 PKLLGRAKEA REFIKYGKNT ATIEIEMKYR DDETVTITRQ ISQDKSSSFS INREACATSS 120
121 ITSLMDTFNV QLNNLCHFLP QDRVAEFAQL DPYSRLMETE RAIDHEGLLP AHEKLIDLRK 180
181 REREILQNKN QGQSTLNSLK DRQQALEKEV NIFKEREKIK SYIEMLGLAK MLVIYREKTN 240
241 VFNQLRADKK KLKKDLKDLV EEFQPILDKG EEL
|
| Detection Method: |  |
| Confidence: | 21.0 |
| Match: | 1w1wA |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA clamp loader activity | 3.22518920754305 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 3.19273435123154 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| motor activity | 2.40267948113603 | bayes_pls_golite062009 |
| microtubule motor activity | 2.37639635793291 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| nucleic acid binding | 2.21184938313192 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
| bubble DNA binding | 1.70168298920956 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.50574672650697 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| tubulin binding | 1.01673904002272 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| microtubule binding | 0.902404986889887 | bayes_pls_golite062009 |
| actin binding | 0.875514430441177 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.720649395550746 | bayes_pls_golite062009 |
| transcription factor activity | 0.697256579145077 | bayes_pls_golite062009 |
| transcription repressor activity | 0.677612020025357 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.58862275163252 | bayes_pls_golite062009 |
| centromeric DNA binding | 0.322818640526369 | bayes_pls_golite062009 |
| microfilament motor activity | 0.26523838851913 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.26252931460003 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 0.185603938981231 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
|
Region A: Residues: [274-771] |
1 11 21 31 41 51
| | | | | |
1 RSDLKLKDDT FNDYSSASME LNTSNLRARA SFSNFMENEK KLYEKVNTNR TLLRNANLTL 60
61 NEAQQSVKSL TERQGPRPSD NGVQDLQEKM QEVNAEKLQH ENEKLESSHE LGSIRTLKAQ 120
121 KLIDLDNIKR ELSYYNDATK RKLDFMSSAP GWEDAYQTYQ LLKEYESAFE APAYGPIYMN 180
181 LKCKEKGFAA LIEGFFRTDT FRTFIMSNYN DYLKLMDLIT SKTKYTPTIR EFSSERKKKI 240
241 EDFEPPCSRE KLQSFGFDGY VIDFLEGPEV VLVALCHMLK IHQIPIAKRE LPPASVNALN 300
301 NFRLANGDPV LKTYLAGSSI HLVFRSAYGD REITRRTDPL PSRSIYFSEN VEMDLVKRKE 360
361 EQLNAQLSQL ENLQNEERKL QEKVNEHESL LSRTNDILST LRKERDEKLI PIHEWQQLQE 420
421 RIEHQTLLLR QREKVPEQFA AEIEKNEDIR KENFEALMNS VLKVKENSIK ATNNFEKMLG 480
481 SRLNVIEAKY KLEKHEMD
|
| Detection Method: | |
| Confidence: | 1.69 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [772-1065] |
1 11 21 31 41 51
| | | | | |
1 ANQVNARLTE VQDRLKDITD KLASAREDAM SLYGSVVDSL QTQSSDRQTA ITELNEEFAT 60
61 SSEVDNKISI EETKLKFMNV NSYVMEQYDA RKKEIEELES KMSDFDQSVE ELQDEMNSIK 120
121 EDWVSKLEEN VQCISDRFSK GMSGMGYAGE VRLGKSDDYD KWYIDILVQF REEEGLQKLT 180
181 GQRQSGGERS VSTIMYLLSL QGLAIAPFRI VDEINQGMDP RNERVVHRHI VNSVCDNAVS 240
241 QYFLVTPKLL PDLTYHRNLK VLCICNGAWL PATFRTSLST YFEKLKKSAL ISSS
|
| Detection Method: | |
| Confidence: | 4.045757 |
| Match: | 2iw3A |
| Description: | No description for 2iw3A was found. |
