| Protein: | psm1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1233 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psm1.
| Description | E-value | Query Range |
Subject Range |
|
|
319.0 | [0..4] | [953..214] |
|
|
304.0 | [0..4] | [1209..318] |
|
|
301.0 | [0..1] | [1217..1] |
|
|
301.0 | [0..1] | [1217..1] |
|
|
301.0 | [0..1] | [1217..63] |
|
|
301.0 | [0..4] | [1209..233] |
|
|
301.0 | [0..1] | [1217..1] |
|
|
300.0 | [0..1] | [1223..1] |
|
Region A: Residues: [1-379] |
1 11 21 31 41 51
| | | | | |
1 MGRLLRLEVE NFKSYRGHQI IGPFEDFTSI IGPNGAGKSN LMDAISFVLG VKSSHLRSTN 60
61 VKELIYRGKI LQRDNTDFTD SSNPTTAYVK LMYELDNGEQ REYKRAITPS GATEYKIDEE 120
121 IVTFSEYCGS LQKENILVRA RNFLVFQGDV ETIASQSPLE LSKLVEQISG SLEYKSEYDK 180
181 SKDEQDKAVN LSAHSFNKKR GINAELRQYQ EQKTEAERYQ SQKEKRDSAQ LVYLLWKLFH 240
241 LEKSISSNMA EVTRLKADSI QLIERRDENT KEIEKLKEKE GSIRRNLLAF DRKVRKQEKL 300
301 IASKRPELIS IAEKALESKS NLRKIQRKAA EIEKDYSDQA STLQVLENQL TSLSAAEKEF 360
361 LKDMQEKEQL KGLRLLPED
|
| Detection Method: |  |
| Confidence: | 27.30103 |
| Match: | 1w1wA |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| motor activity | 2.79327761685782 | bayes_pls_golite062009 |
| microtubule motor activity | 2.74365461017633 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.16381244011837 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| bubble DNA binding | 2.11656807287934 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.11265775498161 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.11046854230259 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| 1.75135117904448 | bayes_pls_golite062009 | |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| hydrolase activity | 1.66122526893602 | bayes_pls_golite062009 |
| ATPase activity | 1.53315090215319 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41477043612798 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.40488517180956 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
| nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| DNA binding | 1.11699929651302 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription regulator activity | 0.989226939888218 | bayes_pls_golite062009 |
| tubulin binding | 0.979946830272106 | bayes_pls_golite062009 |
| microtubule binding | 0.907162506177187 | bayes_pls_golite062009 |
| recombinase activity | 0.88721523495679 | bayes_pls_golite062009 |
| actin binding | 0.883285269827407 | bayes_pls_golite062009 |
| RNA binding | 0.715902454627085 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| kinetochore binding | 0.534490088080411 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.388587892299301 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.372638007722845 | bayes_pls_golite062009 |
| GTP binding | 0.364508542344128 | bayes_pls_golite062009 |
| centromeric DNA binding | 0.322818640526369 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| GTPase activity | 0.234351968078991 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| dynein binding | 0.150959629961177 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| transcription factor activity | 0.0434163635422169 | bayes_pls_golite062009 |
| microfilament motor activity | 0.0313060889304495 | bayes_pls_golite062009 |
|
Region A: Residues: [380-441] |
1 11 21 31 41 51
| | | | | |
1 KEEYEGLRSE ADKLNSNLLF KLQTLNRNIK VTSQSKDSLT SIVGDLESKI KSLHESVSSL 60
61 DT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [442-686] |
1 11 21 31 41 51
| | | | | |
1 ERADLLAKIN EKIESLELEK HDQQKKRLTY SELFHKTQEL NEELQSCLQK ILEASADRNE 60
61 SKQDAKKREA LYALKRIYPE VKGRIIDLCT PTQKKYESAI AAALGKNFDA IVVETQAVAK 120
121 ECIDYIKEQR IGIMTFFPMD TIAASPVNQK FRGTHKGARL AIDVLNFESE YERVMISAVG 180
181 NTLICDSMTV ARDLSYNKRL NAKTVTLEGT VIHKTGLITG GSSNNRSAKH WDDHDFDLLT 240
241 QTKDR
|
| Detection Method: | |
| Confidence: | 4.85 |
| Match: | 1gxlA |
| Description: | Smc hinge domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.91859588671053 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.23709457794394 | bayes_pls_golite062009 |
| nucleic acid binding | 1.16063754070957 | bayes_pls_golite062009 |
| DNA binding | 1.10832034923143 | bayes_pls_golite062009 |
| protein binding | 1.02696508439754 | bayes_pls_golite062009 |
| DNA secondary structure binding | 1.02239440262162 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.999818859536395 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.558475595998159 | bayes_pls_golite062009 |
| catalytic activity | 0.265320175609019 | bayes_pls_golite062009 |
| protein dimerization activity | 0.108132520107784 | bayes_pls_golite062009 |
|
Region A: Residues: [687-996] |
1 11 21 31 41 51
| | | | | |
1 LMHQIGEIEY QKSSCVITES DTVKLHSLES EISLLKDKYT VVSRSVEDKK KEIGHYESLI 60
61 KEKQPHLSEL EMELRNFVKS RDELQIQVEK VEEKIFSGFC KRIGISDIHT YDEIHRTFTQ 120
121 SFTQKQLEFT KQKSLLENRI SFEKQRVSDT RLRLERMHKF IEKDQESIDN YEQNREALES 180
181 EVATAEAELE LLKEDFASEN SKTEKILLAA SEKKLVGKRL VSELTKLSGN ITLLESEIDR 240
241 YVSEWHAILR KCKLEDIDVP LREGSLTSIP IDDVSNSGDI TMGEEPSEPV INFEKFGVEV 300
301 DYDELDEELR
|
| Detection Method: | |
| Confidence: | 2.05 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [997-1059] |
1 11 21 31 41 51
| | | | | |
1 NDGSESMASV LQEKLREYSE ELDQMSPNLR AIERLETVET RLAKLDEEFA AARKAAKNAK 60
61 ERF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1060-1233] |
1 11 21 31 41 51
| | | | | |
1 NAVKQKRLQK FQAAFSHISE QIDPIYKELT KSPAFPLGGT AYLTLDDLDE PYLGGIKFHA 60
61 MPPMKRFRDM DQLSGGEKTM AALALLFAIH SYQPSPFFVL DEIDAALDQT NVTKIANYIR 120
121 QHASSGFQFV VISLKNQLFS KSEALVGIYR DQQENSSRTL SINVRDYFFL ILKY
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1xewY |
| Description: | Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases. |
Matching Structure (courtesy of the PDB): |
|
